View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_19 (Length: 309)
Name: NF1413_low_19
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 29289485 - 29289208
Alignment:
| Q |
5 |
caaattaatatgtaaaagttcaatatcctaaattggaactggatcactaaagattggacaatttgggatttaacccatattttagacagtactctacccc |
104 |
Q |
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| T |
29289485 |
caaattaatatgtaaaagttcaatatcctaaattggaactggatcactaaagattggacaatttgggatttaacccatattttagacagtactctatccc |
29289386 |
T |
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| Q |
105 |
ctgttttggtagatgtaaatttactatttcccccatgttatagcagagcaattaatctattaagctctgttatttaattg---agtgtgttgtctaggaa |
201 |
Q |
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| T |
29289385 |
ttgttttggtagatgtaaatttactatttcccccattttatagc--agcaattaatctattaagctctgttatttaattgattagtgtgttgtctaggaa |
29289288 |
T |
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| Q |
202 |
atataagctgttaggatttgatcataatattctgtgcaatgccttccaaatcattgtcaacaatgaaaattttcaagacaagaccaacct |
291 |
Q |
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| T |
29289287 |
atataagc----------tgatcttaatagtctgtgcaatgccttccaaatctttgtcaacaatgaaaattgtcaagataagactaacct |
29289208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 29284182 - 29283917
Alignment:
| Q |
5 |
caaattaatatgtaaaagttcaatatcctaaattggaactggatcactaaagattggacaatttgggatttaacccatattttagacagtactctacccc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
29284182 |
caaattaatatgtaaaagttcaatatcctaaattggaactggatcactaaagattggacaatttgggatttaacccatattattgatagtactctacccc |
29284083 |
T |
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| Q |
105 |
ctgttttggt-agatgtaaatttactattt-cccccatgttatagcagagcaattaatctattaagctctgttatttaattgagtgtgttgtctaggaaa |
202 |
Q |
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| T |
29284082 |
ttgttttggtaagatgtaaatttactatttccccccattttgtagc--agcaattaatcaattaagc---------------------ttgtctaggaaa |
29284006 |
T |
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| Q |
203 |
tataagctgttaggatttgatcataatattctgtgcaatgccttccaaatcattgtcaacaatgaaaattttcaagacaagaccaacct |
291 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29284005 |
tataagctgctaggatttgatcataatattctgtgcaatgccttccaaatctttgtcaacaatgaaaattttcaagacaagaccaacct |
29283917 |
T |
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