View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_2 (Length: 716)
Name: NF1413_low_2
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Original strand, 38877675 - 38878353
Alignment:
| Q |
19 |
cacgcaacatcctcatctttgcgacacttattttattctcgtgttagttatttaccactcaagtctatgtcccatacaacatcgccaatcttaagactgt |
118 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38877675 |
cacgcaacatcctcatctctgctacacttattttattctcgtgttagttatttaccactcaagtctatgtcccatacaacatcgccaatcttaagactgt |
38877774 |
T |
|
| Q |
119 |
actatataattgtcccttcagcttgaacggtgctttaagtaaaacgactaagcaagttgattcacttgttatnnnnnnnnnnnnnnnnn---ctttcatt |
215 |
Q |
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|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38877775 |
actatataattgtcccttcagcttgagcggtactt-aagtaaaacgactaagcaagttgattcacttgttaacaaaaaaaaaaaaaaaaaaactttcatt |
38877873 |
T |
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| Q |
216 |
acacatacattagttttgccttgtatgtggattgtgacgataaattatgaagcaaggacacccacaataatttgagaaaatgacaactcaatttaatcac |
315 |
Q |
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||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38877874 |
acacataaattagttttgctt---atgtggattgtgacgataaattatgaagcaaggacacccacaataatttgagaaaatgacaactcaatttaatcac |
38877970 |
T |
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| Q |
316 |
atatgttagtgtcctataggtgttagacatcaacaagtgttagacaccggacacaccttcaatagtgtcggtgctaaagatatatgataaagctcaacat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38877971 |
atatgttagtgtcctataggtgttagacatcaacaagtgttagacaccggacacaccttcaatagtgtcggtgctaaagatatatgataaa-----acat |
38878065 |
T |
|
| Q |
416 |
gaatcaaaatttagggtgggaaaattgcgatacctcgaatgcgtgatggaatctacgatactttcgaagctcctggacgcatctctcgagttcatctttt |
515 |
Q |
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| T |
38878066 |
gaatcaaaatttagggtgggaaaattgcgatacctcgaatgcgtgatggaatctacgatactttcgaagctcctggacgcatctctcgagttcatctttt |
38878165 |
T |
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| Q |
516 |
cctaaggctttgccttcgattatatactggttcaacgtctgcgacacggttcctccggtcttttctaggttcgctagtcttcggtaaaggtttgccttct |
615 |
Q |
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| T |
38878166 |
cctaaggctttgccttcgattatatactggttcaacgtctgcgacacggttcctccggtcttttctaggtccgctagtcttcggtaaaggtttgccttct |
38878265 |
T |
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| Q |
616 |
tattcggaagctcagccgccgtcgcagccgtgcatagtcgtcggagaagccttcctccgccggaaatcaaacggctgtaattcatctc |
703 |
Q |
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| T |
38878266 |
tattcggaagctcagccgccgtcgcagccgtgcatagtcgtcggagaagccttcctccgccggaaatcaaacggctgtaattcatctc |
38878353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 52421363 - 52421320
Alignment:
| Q |
24 |
aacatcctcatctttgcgacacttattttattctcgtgttagtt |
67 |
Q |
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| T |
52421363 |
aacattctcatcttcgctacacttattttattctcgtgttagtt |
52421320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 36514548 - 36514603
Alignment:
| Q |
20 |
acgcaacatcctcatctttgcgacacttattttattctcgtgttagttatttacca |
75 |
Q |
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| T |
36514548 |
acgcaacatcctcatctctgctacacttaatttattttcgtgttggttctttacca |
36514603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 2796493 - 2796451
Alignment:
| Q |
21 |
cgcaacatcctcatctttgcgacacttattttattctcgtgtt |
63 |
Q |
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| T |
2796493 |
cgcaacatcctcatctttgctacacttacttgattctcgtgtt |
2796451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42493647 - 42493700
Alignment:
| Q |
20 |
acgcaacatcctcatctttgcgacacttattttattctcgtgttagttatttac |
73 |
Q |
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| T |
42493647 |
acgcaacatcctcatctttgctacacttaatttattttcttgttggttctttac |
42493700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 38904065 - 38904115
Alignment:
| Q |
23 |
caacatcctcatctttgcgacacttattttattctcgtgttagttatttac |
73 |
Q |
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| T |
38904065 |
caacattctcatctttgctacacttattttattcttgtgttggttttttac |
38904115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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