View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1413_low_21 (Length: 247)

Name: NF1413_low_21
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1413_low_21
NF1413_low_21
[»] chr1 (38 HSPs)
chr1 (57-239)||(29261529-29261711)
chr1 (1-129)||(7966092-7966219)
chr1 (6-129)||(1655926-1656048)
chr1 (1-129)||(4518252-4518379)
chr1 (19-129)||(25039917-25040026)
chr1 (1-129)||(51666502-51666629)
chr1 (4-129)||(13177972-13178094)
chr1 (6-129)||(19495154-19495276)
chr1 (1-129)||(46979094-46979221)
chr1 (1-129)||(8459067-8459194)
chr1 (52-129)||(36072522-36072599)
chr1 (1-76)||(38690040-38690114)
chr1 (17-111)||(5141723-5141816)
chr1 (1-78)||(22345931-22346007)
chr1 (9-129)||(52805396-52805515)
chr1 (9-129)||(46886224-46886344)
chr1 (9-129)||(50113424-50113544)
chr1 (1-129)||(21144467-21144594)
chr1 (9-78)||(15051235-15051304)
chr1 (9-78)||(23359236-23359305)
chr1 (10-78)||(20353822-20353890)
chr1 (10-78)||(38771747-38771815)
chr1 (1-129)||(470906-471033)
chr1 (9-129)||(9710695-9710814)
chr1 (9-129)||(22527531-22527650)
chr1 (22-78)||(30909916-30909971)
chr1 (1-129)||(31780077-31780204)
chr1 (9-48)||(50617320-50617359)
chr1 (15-129)||(47714923-47715036)
chr1 (9-129)||(13633709-13633829)
chr1 (1-129)||(94507-94634)
chr1 (53-129)||(12643369-12643445)
chr1 (1-129)||(16281807-16281933)
chr1 (9-129)||(19521714-19521833)
chr1 (22-78)||(29352364-29352419)
chr1 (9-78)||(44469898-44469967)
chr1 (10-78)||(3944092-3944159)
chr1 (10-78)||(3993731-3993798)
[»] chr5 (23 HSPs)
chr5 (6-129)||(24053268-24053390)
chr5 (6-129)||(33994985-33995107)
chr5 (6-129)||(24050141-24050263)
chr5 (1-129)||(25877730-25877857)
chr5 (1-116)||(4196664-4196778)
chr5 (8-129)||(7796694-7796814)
chr5 (1-118)||(41799615-41799731)
chr5 (10-129)||(34122642-34122761)
chr5 (1-129)||(38407257-38407383)
chr5 (6-129)||(30352542-30352662)
chr5 (9-127)||(25890111-25890229)
chr5 (9-78)||(7017628-7017697)
chr5 (9-78)||(27863520-27863589)
chr5 (9-78)||(28388406-28388475)
chr5 (9-78)||(34080018-34080087)
chr5 (9-78)||(37814699-37814768)
chr5 (6-73)||(28882108-28882175)
chr5 (9-129)||(38855832-38855951)
chr5 (9-78)||(13563758-13563827)
chr5 (10-78)||(14280787-14280855)
chr5 (23-129)||(43179736-43179841)
chr5 (1-73)||(7762135-7762207)
chr5 (10-129)||(1039641-1039760)
[»] chr2 (28 HSPs)
chr2 (1-129)||(45479657-45479784)
chr2 (1-129)||(12905632-12905756)
chr2 (1-129)||(41052731-41052858)
chr2 (1-129)||(9659892-9660019)
chr2 (5-129)||(24601753-24601876)
chr2 (5-129)||(24612238-24612361)
chr2 (1-129)||(25184667-25184794)
chr2 (1-129)||(43943799-43943928)
chr2 (1-129)||(439660-439785)
chr2 (1-129)||(82099-82226)
chr2 (1-129)||(28342632-28342759)
chr2 (1-129)||(41181520-41181647)
chr2 (1-129)||(32952840-32952967)
chr2 (1-129)||(10825328-10825455)
chr2 (1-129)||(41004637-41004763)
chr2 (9-129)||(1096686-1096806)
chr2 (4-84)||(7267325-7267405)
chr2 (1-72)||(7189846-7189916)
chr2 (9-129)||(24753860-24753980)
chr2 (1-129)||(39951007-39951134)
chr2 (1-78)||(29398019-29398095)
chr2 (10-78)||(41564379-41564447)
chr2 (9-78)||(3795453-3795522)
chr2 (10-78)||(209102-209169)
chr2 (10-78)||(5351620-5351687)
chr2 (10-78)||(10620091-10620158)
chr2 (10-78)||(18000350-18000417)
chr2 (33-78)||(38950453-38950497)
[»] chr6 (20 HSPs)
chr6 (1-129)||(23959000-23959127)
chr6 (5-129)||(29667669-29667792)
chr6 (1-129)||(7537296-7537423)
chr6 (1-129)||(2258395-2258522)
chr6 (1-129)||(18610069-18610196)
chr6 (1-125)||(25140946-25141069)
chr6 (9-129)||(28362567-28362686)
chr6 (1-129)||(29286312-29286439)
chr6 (1-129)||(2051137-2051264)
chr6 (1-129)||(11840086-11840213)
chr6 (19-129)||(26702547-26702656)
chr6 (24-129)||(8304570-8304674)
chr6 (10-129)||(31150901-31151019)
chr6 (9-78)||(13382745-13382813)
chr6 (23-129)||(20448623-20448728)
chr6 (10-78)||(1608410-1608478)
chr6 (1-129)||(3502500-3502627)
chr6 (22-78)||(18351530-18351585)
chr6 (34-111)||(20439859-20439935)
chr6 (1-129)||(31771576-31771704)
[»] chr7 (20 HSPs)
chr7 (1-129)||(10705357-10705484)
chr7 (1-129)||(34622608-34622735)
chr7 (1-129)||(19044402-19044529)
chr7 (1-129)||(20710107-20710234)
chr7 (9-129)||(40928789-40928909)
chr7 (1-129)||(17838471-17838598)
chr7 (1-129)||(34742232-34742358)
chr7 (1-127)||(5537956-5538079)
chr7 (22-129)||(18109630-18109736)
chr7 (1-48)||(36186416-36186463)
chr7 (1-78)||(12111311-12111387)
chr7 (9-129)||(15070187-15070307)
chr7 (10-78)||(30790895-30790963)
chr7 (1-129)||(13323551-13323678)
chr7 (22-129)||(29592674-29592780)
chr7 (22-129)||(42503675-42503781)
chr7 (9-78)||(47742876-47742945)
chr7 (10-70)||(603897-603957)
chr7 (10-78)||(43619797-43619864)
chr7 (10-78)||(45767749-45767816)
[»] chr8 (20 HSPs)
chr8 (1-129)||(43377129-43377256)
chr8 (1-128)||(4867640-4867766)
chr8 (1-129)||(23578544-23578671)
chr8 (1-129)||(2124287-2124417)
chr8 (9-129)||(39574-39694)
chr8 (34-113)||(7172463-7172541)
chr8 (9-129)||(31959897-31960017)
chr8 (8-129)||(39751177-39751297)
chr8 (10-78)||(7344445-7344512)
chr8 (1-129)||(34367021-34367148)
chr8 (1-129)||(43679506-43679633)
chr8 (9-78)||(23924083-23924151)
chr8 (34-129)||(22661410-22661504)
chr8 (10-78)||(30301251-30301319)
chr8 (9-129)||(35962424-35962544)
chr8 (9-129)||(41743981-41744101)
chr8 (9-129)||(20549095-20549214)
chr8 (23-111)||(31280942-31281029)
chr8 (10-78)||(32375769-32375836)
chr8 (1-129)||(41238958-41239085)
[»] chr4 (16 HSPs)
chr4 (6-125)||(4774454-4774572)
chr4 (6-129)||(18578737-18578859)
chr4 (1-129)||(44050929-44051056)
chr4 (1-129)||(38460535-38460662)
chr4 (2-118)||(10423254-10423369)
chr4 (1-118)||(50905010-50905126)
chr4 (1-129)||(24414944-24415071)
chr4 (9-129)||(37395053-37395173)
chr4 (9-129)||(3408076-3408196)
chr4 (1-129)||(50278659-50278787)
chr4 (1-129)||(37016008-37016135)
chr4 (9-78)||(15995838-15995907)
chr4 (47-129)||(51642161-51642243)
chr4 (10-78)||(49563958-49564026)
chr4 (1-129)||(51492181-51492308)
chr4 (9-78)||(19069303-19069372)
[»] scaffold0169 (1 HSPs)
scaffold0169 (1-129)||(1520-1647)
[»] chr3 (27 HSPs)
chr3 (1-129)||(6489438-6489565)
chr3 (1-129)||(600380-600507)
chr3 (6-129)||(66988-67110)
chr3 (1-129)||(2271464-2271592)
chr3 (1-129)||(21951909-21952036)
chr3 (9-129)||(7841212-7841332)
chr3 (10-78)||(3953103-3953170)
chr3 (1-129)||(16647010-16647136)
chr3 (1-129)||(36134119-36134246)
chr3 (1-129)||(42166248-42166375)
chr3 (1-129)||(47070578-47070705)
chr3 (1-129)||(50213567-50213694)
chr3 (4-78)||(2857869-2857943)
chr3 (4-78)||(9426717-9426791)
chr3 (22-129)||(14402833-14402939)
chr3 (9-129)||(4002341-4002461)
chr3 (9-129)||(48246528-48246648)
chr3 (1-73)||(52387909-52387980)
chr3 (10-78)||(6745213-6745281)
chr3 (1-110)||(9473804-9473912)
chr3 (9-127)||(36812954-36813072)
chr3 (9-78)||(13743384-13743453)
chr3 (9-78)||(50957580-50957649)
chr3 (10-78)||(30943307-30943375)
chr3 (22-78)||(2743528-2743583)
chr3 (1-73)||(4004954-4005025)
chr3 (10-78)||(8156626-8156693)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-129)||(19947-20075)
[»] scaffold0057 (1 HSPs)
scaffold0057 (4-78)||(21762-21835)
[»] scaffold0201 (1 HSPs)
scaffold0201 (9-129)||(22518-22638)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-129)||(12513-12640)
[»] scaffold0116 (1 HSPs)
scaffold0116 (16-129)||(15791-15904)
[»] scaffold0494 (1 HSPs)
scaffold0494 (9-129)||(5163-5283)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-129)||(236072-236199)
[»] scaffold0513 (1 HSPs)
scaffold0513 (9-78)||(8316-8385)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 29261529 - 29261711
Alignment:
Q  57 agcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaatatcttttgctctattctaggaatttaaacaaaaa 156  Q
    ||||||| |||||| ||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29261529 agcattttcaaaggtaatataacttatacaacatttaaattcagtcataaacaagtaaaatacaatatcttttgctctattctaggaatttaaacaaaaa 29261628  T
Q  157 tctaaacaatgttgattagatttttgggcttcgttggaaacaagatatacaatagaagcgattggtacacccttgcctttgct 239  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29261629 tcttaacaatgttgattagatttttgggcttcgttggaaacaagatatacaatagaagcgattggtacacccttgcttttgct 29261711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 7966092 - 7966219
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  7966092 ttctaaagcacttccaagccatttttcggccagtttttacctgtaattt-aaccagagcatttccaaaggcaatataacttatacaacatttaaactcag 7966190  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||||||| ||||||||||    
T  7966191 tcataaacaagtaaaatacaatatctttt 7966219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 1656048 - 1655926
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||| | |||||||    
T  1656048 aagcactttcaagccatttttcggccagtttttacctgtaattt-aatcagagcatttccaaaggcaatataacttatacaacatttaaatttagtcata 1655950  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    ||||||||||||| ||||||||||    
T  1655949 aacaagtaaaatacaatatctttt 1655926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 4518379 - 4518252
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||| | ||| |||||  |||||| |    
T  4518379 ttctaaagcattttcaagccatttttcggccagtttttacctgtaa-ttaaaccaaagcatttccaaaggcaatataaatcatacaacattgaaactcgg 4518281  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  4518280 tcataaacaagaaaaatacaatatctttt 4518252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 25040026 - 25039917
Alignment:
Q  19 ccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaata 118  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||    
T  25040026 ccatttttcggccagtttttacctgtaattt-aaccagaacatttccaaagacaatataacttgtacaacatttaaactcagtcataaacaagtaaaata 25039928  T
Q  119 gaatatctttt 129  Q
     ||||||||||    
T  25039927 caatatctttt 25039917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 51666629 - 51666502
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| | ||| |||||  |||||| |    
T  51666629 ttctaaagcattctcaagccatttttcggccaatttttacctgtaa-ttaaaccaaagcatttccaaaggcaatataaatcatacaacattgaaactcgg 51666531  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||| ||||    
T  51666530 tcataaacaagaaaaatacaatatatttt 51666502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 13178094 - 13177972
Alignment:
Q  4 taaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtca 103  Q
    ||||||| || |||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  |  | ||||||||||||    
T  13178094 taaagcacttccaagccattttttgaccagtttttacctgtaattt-aaccagagcatttccaaaggcaatataacttatatta--tttaaactcagtca 13177998  T
Q  104 taaacaagtaaaatagaatatctttt 129  Q
    ||||||||||||||| ||||||||||    
T  13177997 taaacaagtaaaatataatatctttt 13177972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 19495154 - 19495276
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||| | ||| ||||| ||||||||||||||    
T  19495154 aagcatttccaagctatttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataattcatacaacatttaaactcagtcata 19495252  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    || ||| |||||| ||||||||||    
T  19495253 aataagaaaaatacaatatctttt 19495276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 46979221 - 46979094
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||||||||| ||||||||| || ||||||| |||||||  || ||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  46979221 ttctaaaacattttcaagctatttttcggtcagtttttacttgtaatta-aatcagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 46979123  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||||||||||||||    
T  46979122 tcataaacaagaaaaatagaatatctttt 46979094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 8459067 - 8459194
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||||||||  ||||||||||||| ||| |||||||||||||||  ||||| |||||||||||||||||||||| | ||| |||||  |||||  |    
T  8459067 ttctaaagcatttctaagccatttttcgaccagtttttacctgtaatta-aaccatagcatttccaaaggcaatataaatcatacaacattgaaacttgg 8459165  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  8459166 tcataaacaagaaaaatacaatatctttt 8459194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 36072522 - 36072599
Alignment:
Q  52 accagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaatatctttt 129  Q
    |||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||    
T  36072522 accagaacatttccaaaggcaatataacttatacaacagttaaactcagtcataaacaagtaaaatacaatatctttt 36072599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38690040 - 38690114
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatat 76  Q
    ||||||||||||| |||||||||||||||||| |||||| |||||| || |||||||| |||||||||||||||||    
T  38690040 ttctaaagcatttccaagccatttttcggccagtttttatctgtaa-ttaaaccagaggatttccaaaggcaatat 38690114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 5141816 - 5141723
Alignment:
Q  17 agccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaag 111  Q
    ||||||||||||| || |||||||||||||||  || |||| |||||||||||||||||||||| ||| ||||| || |||||| ||||||||||    
T  5141816 agccatttttcggtcagtttttacctgtaatta-aagcagaacatttccaaaggcaatataactcatacaacatttatactcaggcataaacaag 5141723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22346007 - 22345931
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||||| |||||| |||||||||||||| ||| ||||||||||||| || | ||||||||||||||||||||||||||    
T  22346007 ttctaatgcatttccaagccatttttcgaccagtttttacctgtaa-ttaagccagagcatttccaaaggcaatataa 22345931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 52805515 - 52805396
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| ||||||||||||||| ||  ||||||||||||||  |||||||| |||||||||||||| |||| | ||| |||||  |||||| | ||||||     
T  52805515 catttccaagccatttttcggtcagcttttacctgtaatta-aaccagagtatttccaaaggcaaaataattcatataacattgaaactctgacataaat 52805417  T
Q  109 aagtaaaatagaatatctttt 129  Q
    ||| |||||| ||||||||||    
T  52805416 aagaaaaatacaatatctttt 52805396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 46886344 - 46886224
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||| | |||||||||||||||  ||||||||| ||||||||||||| |||| | ||| |||||  |||||| | ||||||    
T  46886344 catttccaagccattttttcggctagtttttacctgtaatta-aaccagagcctttccaaaggcaaaataattcatacaacattgaaactcggacataaa 46886246  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  46886245 caagataaatacaatatctttt 46886224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 50113424 - 50113544
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||||||| |||||||| |||| | |||||| ||||||||  ||||||||||||||||||||||| |||| | ||| ||| |  |||||||| ||||||    
T  50113424 cattttcaatccattttttcggctagtttttaactgtaatta-aaccagagcatttccaaaggcaaaataattcatacaacgttgaaactcagacataaa 50113522  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  50113523 caagataaatacaatatctttt 50113544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 21144594 - 21144467
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||||||||||||||| |||||| ||||||  | || ||||| ||||| |||||||| |||| | ||| |||||  ||||||      
T  21144594 ttctaaaacatttccaagccatttttcggccagtttttatctgtaa-gtaaagcagagaatttcgaaaggcaaaataattcatacaacattgaaactcga 21144496  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||| ||||||||||    
T  21144495 acataaacaagaaaaatacaatatctttt 21144467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 15051304 - 15051235
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  15051304 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 15051235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 23359305 - 23359236
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  23359305 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 23359236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 20353890 - 20353822
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  20353890 atttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataa 20353822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 38771747 - 38771815
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  38771747 atttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataa 38771815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 471033 - 470906
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| || | | ||||||||||| ||||||||||||| || |||||||||||||| |||||||| | || | ||| |||||  |||||| |    
T  471033 ttctaaaacatttccaggtcttttttcggccagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcgg 470935  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  || || ||||||||||    
T  470934 acataaacaagataagtacaatatctttt 470906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 9710695 - 9710814
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| ||||||||||||||| || ||||||||||||| || ||| |||| ||||||||||| || |||| | ||| |||||  |||||  | |||||||    
T  9710695 catttccaagccatttttcggtcagtttttacctgtaa-ttaaacaagagtatttccaaaggtaaaataattcatacaacattgaaactaggacataaac 9710793  T
Q  109 aagtaaaatagaatatctttt 129  Q
    |||  ||||| ||||||||||    
T  9710794 aagataaatacaatatctttt 9710814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 22527650 - 22527531
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| |||||| ||||||||| | ||||||||||||| || |||||||||||||| |||||||| | || | ||| |||||  |||||| | |||||||    
T  22527650 catttccaagccttttttcggctagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcggacataaac 22527552  T
Q  109 aagtaaaatagaatatctttt 129  Q
    |||  ||||| ||||| ||||    
T  22527551 aagataaatacaatatgtttt 22527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 30909971 - 30909916
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  30909971 tttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 30909916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31780077 - 31780204
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||  |||| |||||  ||||||||||||||||||||||||| || | |||||||||||| || ||||| | || | ||| |||||  |||||| |    
T  31780077 ttctaaaatatttccaagcattttttcggccaatttttacctgtaa-ttaagccagagcatttcgaatggcaaaacaattcatacaacattgaaactcgg 31780175  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  31780176 acataaacaagataaatacaatatctttt 31780204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 50617320 - 50617359
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaatt 48  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  50617320 cattttcaagccatttttcggccagtttttacctgtaatt 50617359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 47715036 - 47714923
Alignment:
Q  15 caagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaa 114  Q
    |||||||||||||||| | ||||||||| ||| || |||||||||||||||| |  |||||| | |  || ||||| || ||||||||||||||||  ||    
T  47715036 caagccatttttcggctagtttttacctataa-ttcaaccagagcatttccagaaacaatattagtcgtacaacatttatactcagtcataaacaacaaa 47714938  T
Q  115 aatagaatatctttt 129  Q
    |||| | ||||||||    
T  47714937 aatacattatctttt 47714923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 13633829 - 13633709
Alignment:
Q  9 cattttcaagccatttttc-ggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| ||||||||||||| ||||| |||||||||||||||  |||||||  |||||||||||| | |||| | ||| || ||  |||||| |||||||     
T  13633829 catttccaagccatttttccggccagtttttacctgtaatta-aaccagacaatttccaaaggctaaataattcatacaatattgaaactcggtcataat 13633731  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  13633730 caagataaatacaatatctttt 13633709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 94507 - 94634
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||| | ||||| | ||| |||||||||||||||  || ||||||||||| |||||||| | || | ||| |||||  |||||| |    
T  94507 ttctaaaacatttccaaggctttttttgaccagtttttacctgtaatta-aagcagagcatttcgaaaggcaaaacaattcatacaacattgaaactcgg 94605  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  94606 acataaacaagataaatacaatatctttt 94634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 12643369 - 12643445
Alignment:
Q  53 ccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||||||||||||| |||| | ||| || ||  |||||||| ||||||||||  ||||| ||||||||||    
T  12643369 ccagagcatttccaaaggcaaaataattcatacaagattgaaactcagacataaacaagataaatacaatatctttt 12643445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 16281807 - 16281933
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| ||| | ||||||||| || ||||||| |||||||  || ||||||||||| |||||||| |||| | ||| |||||  |||||| |    
T  16281807 ttctaaaacatttccaaactatttttcggtcagtttttac-tgtaatta-aagcagagcatttcgaaaggcaaaataattcatacaacattaaaactcgg 16281904  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||| ||||| ||||    
T  16281905 acataaacaagaaaaatacaatatttttt 16281933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 19521714 - 19521833
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| |||||||||||| || || |||||||||| ||||  || ||||||||||| |||||||| |||| | ||| | |||  |||||| | |||||||    
T  19521714 catttccaagccattttttggtcactttttacctgcaatta-aagcagagcatttcgaaaggcaaaataattcatacagcattgaaactcggacataaac 19521812  T
Q  109 aagtaaaatagaatatctttt 129  Q
    ||| ||||||  |||||||||    
T  19521813 aagaaaaatactatatctttt 19521833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 29352364 - 29352419
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||||||||||| ||||| || ||||||||||||| ||||||||| ||||    
T  29352364 tttttcggccaatttttacttgtaa-ttaaaccagagcatttgcaaaggcaaaataa 29352419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 44469967 - 44469898
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| ||| || |||||||||||||||  ||||||||||||| ||||||||| ||||    
T  44469967 catttccaagccattttttcggtcagtttttacctgtaattg-aaccagagcattttcaaaggcaaaataa 44469898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 3944092 - 3944159
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  3944092 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 3944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 3993798 - 3993731
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  3993798 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 3993731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 24053268 - 24053390
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  24053268 aagcattttcaagccatttttcggccagtttttacctgtaattt-aaccagagcattttcaaaggcaatataacttatacaacatttaaactcagtcata 24053366  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    ||||||||||||| ||||||||||    
T  24053367 aacaagtaaaatacaatatctttt 24053390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 33995107 - 33994985
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||| |||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  33995107 aagcatttccaagccatttttcggccagtttttacatgtaattt-aaccagaacatttccaaaggcaatataacttatacaacatttaaactcagtcata 33995009  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    ||||||||||||| ||||||||||    
T  33995008 aacaagtaaaatacaatatctttt 33994985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 24050141 - 24050263
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||| |||||||||||||||||| |||| || |||||||| |||||||||||| ||||||| ||||||||||||| ||||| |||| |||||||||    
T  24050141 aagcatttccaagccatttttcggccagttttcacatgtaattt-aaccagagcattaccaaaggaaatataacttatacaacatttaaattcagtcata 24050239  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    ||||||||||||| ||||||||||    
T  24050240 aacaagtaaaatacaatatctttt 24050263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25877730 - 25877857
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||| |||| ||||||||| | ||| |||||  |||||  |    
T  25877730 ttctaaagcatttccaagccatttttcggccagtttttacctgtaa-ttaaaccagagcattttcaaaagcaatataaatcatacaacattgaaacttgg 25877828  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  25877829 tcataaacaagaaaaatacaatatctttt 25877857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 4196664 - 4196778
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  4196664 ttctaaagcatttccaagctatttttcggtcaatttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 4196762  T
Q  101 tcataaacaagtaaaa 116  Q
    ||||||||||| ||||    
T  4196763 tcataaacaagaaaaa 4196778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 7796694 - 7796814
Alignment:
Q  8 gcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    |||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| || |||||    
T  7796694 gcatttccaagctatttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcggttataaa 7796792  T
Q  108 caagtaaaatagaatatctttt 129  Q
    |||| |||||| ||||||||||    
T  7796793 caagaaaaatacaatatctttt 7796814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 41799731 - 41799615
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||| |||||||| |||| | ||| |||||  |||||  |    
T  41799731 ttctaaaacattttcaagccatttttcggccagtttttacctgtaa-ttaaagcagagcatttcgaaaggcaaaataattcatacaacattgaaacttgg 41799633  T
Q  101 tcataaacaagtaaaata 118  Q
     |||||||||| ||||||    
T  41799632 acataaacaagaaaaata 41799615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 34122642 - 34122761
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||||||||||||||| |||||| |||||||||||||||  ||||||||||||| ||||||||| |||| | ||| |||||  |||||| | |||||||    
T  34122642 attttcaagccattttttcggccagtttttacctgtaatta-aaccagagcattttcaaaggcaaaataattcatacaacattgaaactcggacataaac 34122740  T
Q  109 aagtaaaatagaatatctttt 129  Q
    |||  ||||| ||||||||||    
T  34122741 aagataaatacaatatctttt 34122761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 38407257 - 38407383
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| ||||||||||| |||||| ||||||||||||| || || |||| |||||| |||||||| |||| | ||| |||||  ||||||||    
T  38407257 ttctaaaacatttccaagccatttt-cggccagtttttacctgtaa-ttaaagcagaacatttcgaaaggcaaaataattcatacaacattgaaactcag 38407354  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||| ||||||||||    
T  38407355 acataaacaagaaaaatacaatatctttt 38407383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 30352542 - 30352662
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||||||||||||||||||  || |||||| |||||| |  || ||||||||||||||| |||||||||   ||| ||||| ||||||||||||||    
T  30352542 aagcattttcaagccatttttcgatcagtttttatctgtaaata-aatcagagcatttccaaatgcaatataagccatacaacatttaaactcagtcata 30352640  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    |  ||| |||||| ||||||||||    
T  30352641 a--aagaaaaatacaatatctttt 30352662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 25890111 - 25890229
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| | ||||||    
T  25890111 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggacataaa 25890209  T
Q  108 caagtaaaatagaatatctt 127  Q
    ||||  ||||| ||||||||    
T  25890210 caagataaatacaatatctt 25890229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 7017628 - 7017697
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||||||||||||||||| |||||| |||||| ||||||||  ||||||||||||||||||||||| ||||    
T  7017628 cattttcaagccattttttcggccagtttttatctgtaatta-aaccagagcatttccaaaggcaaaataa 7017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 27863520 - 27863589
Alignment:
Q  9 cattttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||||||||| ||||||| ||||||||||||| || ||||||| ||||||||||||||| ||||    
T  27863520 cattttcaagccattttttcggccagtttttacctgtaa-ttaaaccagaacatttccaaaggcaaaataa 27863589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 28388475 - 28388406
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  28388475 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 28388406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 34080087 - 34080018
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  34080087 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 34080018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 37814699 - 37814768
Alignment:
Q  9 cattttcaagccatttttc-ggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| ||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  37814699 catttccaagccatttttccggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 37814768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 28882108 - 28882175
Alignment:
Q  6 aagcattttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaa 73  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| || ||||||||||||| |||||||||    
T  28882108 aagcatttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagcatttacaaaggcaa 28882175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 38855832 - 38855951
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| ||||||||||||||| || ||||||||||||| || |||||||  |||||||||||| | |||| | ||| || ||  |||||| ||||||| |    
T  38855832 catttccaagccatttttcggtcagtttttacctgtaa-ttaaaccagacaatttccaaaggctaaataattcatacaatattgaaactcggtcataatc 38855930  T
Q  109 aagtaaaatagaatatctttt 129  Q
    |||  ||||| ||||||||||    
T  38855931 aagataaatacaatatctttt 38855951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 13563758 - 13563827
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||| | |||||||||||||||  ||||||||||||||||||||||| ||||    
T  13563758 catttccaagccattttttcggctagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 13563827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 14280855 - 14280787
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| ||||||||||||| || |||||||||||||||||| | |||||||    
T  14280855 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaatgtaatataa 14280787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 43179841 - 43179736
Alignment:
Q  23 ttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaat 122  Q
    ||||||| || |||||||||||||||  ||||||||||||| |||||||||||  | |  || ||||| || |||| |||| ||||||| |||||| | |    
T  43179841 ttttcggtcagtttttacctgtaattc-aaccagagcattttcaaaggcaatactagtcgtacaacatttatactcggtcaaaaacaagaaaaatatatt 43179743  T
Q  123 atctttt 129  Q
    |||||||    
T  43179742 atctttt 43179736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7762207 - 7762135
Alignment:
Q  1 ttctaaagcattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaa 73  Q
    ||||||| |||||||||||| ||||| |||||| ||||||||||||| || ||||| |||||||  ||||||||    
T  7762207 ttctaaaacattttcaagcctttttttcggccagtttttacctgtaa-ttaaaccaaagcattttgaaaggcaa 7762135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 1039760 - 1039641
Alignment:
Q  10 attttcaagccatttttcggc-caatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    |||| |||||||||||| ||  || |||||||||||||||  ||||||||||||| ||||||||| |||| | ||| || ||  |||||| | |||||||    
T  1039760 atttccaagccattttttgggtcagtttttacctgtaatta-aaccagagcattttcaaaggcaaaataattcatacaagattgaaactcggacataaac 1039662  T
Q  109 aagtaaaatagaatatctttt 129  Q
    | |  ||||| ||||||||||    
T  1039661 acgataaatacaatatctttt 1039641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 45479784 - 45479657
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  45479784 ttctaaagcattttcaagctatttttcggccagtttttacttgtaattt-aaccagagcatttccaaaggcaatataactaatacaacatttaaactcag 45479686  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||||||| ||||||||||    
T  45479685 tcataaacaagtaaaatacaatatctttt 45479657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 12905632 - 12905756
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||| ||| |||||||   |||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  12905632 ttctaaagcatttccaagccatttttcgaccagtttttac---taattt-aaccagagcatttccaaaggcaatataactcatacaacatttaaactcag 12905727  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||||||| ||||| ||||    
T  12905728 tcataaacaagtaaaatacaatatatttt 12905756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 41052731 - 41052858
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||| ||||||||||||||||||| | ||| |||||  |||||| |    
T  41052731 ttctaaagcatttccaagccatttttcggccagtttttacctgtaatta-aaccagagtatttccaaaggcaatataaatcatacaacattgaaactcgg 41052829  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  41052830 tcataaacaagaaaaatacaatatctttt 41052858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 9660019 - 9659892
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  9660019 ttctaaaacatttccaagccatttttcggccagtttttacctttaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 9659921  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  9659920 tcataaacaagaaaaatacaatatctttt 9659892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 24601753 - 24601876
Alignment:
Q  5 aaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcat 104  Q
    ||||||||| ||||||||||||||| || ||||||| |||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |||||    
T  24601753 aaagcatttccaagccatttttcggtcagtttttacttgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcggtcat 24601851  T
Q  105 aaacaagtaaaatagaatatctttt 129  Q
    ||||||| |||||| ||||||||||    
T  24601852 aaacaagaaaaatacaatatctttt 24601876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 24612361 - 24612238
Alignment:
Q  5 aaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcat 104  Q
    ||||||||| ||||||||||||||| || ||||||| |||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |||||    
T  24612361 aaagcatttccaagccatttttcggtcagtttttacttgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcggtcat 24612263  T
Q  105 aaacaagtaaaatagaatatctttt 129  Q
    ||||||| |||||| ||||||||||    
T  24612262 aaacaagaaaaatacaatatctttt 24612238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 25184794 - 25184667
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||  |||||||| |||| |||||||||||||| | ||| |||||  |||||| |    
T  25184794 ttctaaaacatttccaagccatttttcggccagtttttacctgtaatta-aaccagagtattttcaaaggcaatataaatcatacaacattgaaactcgg 25184696  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  25184695 tcataaacaagaaaaatacaatatctttt 25184667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43943799 - 43943928
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggc--aatataacttatagaacatataaactc 98  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||| || |||||||||||||||||||||  ||||||| | ||| |||||  ||||||    
T  43943799 ttctaaagcatttccaagccatttttcggtcagtttttacctgtaa-ttaaaccagagcatttccaaaggcaaaatataaatcatacaacattaaaactc 43943897  T
Q  99 agtcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||||| |||||| ||||||||||    
T  43943898 ggtcataaacaagaaaaatacaatatctttt 43943928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 439785 - 439660
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||| || |||||| ||||||||||||||||||||| | ||| |||||  |||||| |    
T  439785 ttctaaagcatttccaagccatttttcggtcagtttttacctgtaa-ttaaaccagcgcatttccaaaggcaatataaatcatacaacattgaaactcgg 439687  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||  ||||| ||||||||||    
T  439686 tcataaacaag--aaatacaatatctttt 439660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 82226 - 82099
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||| || |||||||||||||| ||||||| ||||| | ||  |||||  |||||  |    
T  82226 ttctaaagcattttcaaaccatttttcggtcagtttttacctgtaa-ttaaaccagagcatttctaaaggcagtataaatcatccaacatcaaaacttgg 82128  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  82127 tcataaacaagaaaaatacaatatctttt 82099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28342632 - 28342759
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||| |||| ||| | |||||||||||| |||||| ||||||||  ||||||| |||||||||||||||||||| | ||| |||||  |||||| |    
T  28342632 ttctaaagaatttccaaactatttttcggccagtttttatctgtaatta-aaccagaacatttccaaaggcaatataaatcatacaacattgaaactcgg 28342730  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  28342731 tcataaacaagaaaaatacaatatctttt 28342759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 41181520 - 41181647
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||| |||||| |||||||||||| || || |||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  41181520 ttctaatgcatttccaagccattttttgggcagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 41181618  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||  ||| |||||| ||||||||||    
T  41181619 tcataactaagaaaaatacaatatctttt 41181647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32952840 - 32952967
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||| || || ||||||||||| |||||||| |||| | ||| |||||  ||||||||    
T  32952840 ttctaaatcattttcaagccatttttcggtcagtttttacctgtaa-ttaaagcagagcatttcgaaaggcaaaataattcatacaacattgaaactcag 32952938  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||| |||||| |||||| ||||| ||||    
T  32952939 acatcaacaagaaaaatacaatatttttt 32952967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10825328 - 10825455
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||  ||||||||||| |||||||||||||||  |||||||||||||| |||||||| | || | ||| |||||  ||||||||    
T  10825328 ttctaaaacatttccaagcattttttcggccagtttttacctgtaatta-aaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcag 10825426  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  10825427 acataaacaagataaatacaatatctttt 10825455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 41004637 - 41004763
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||||||||  |||||||||| ||| || |||||||||||||||  ||||  ||||||||||||| |||||||| | ||| |||||  |||||| |    
T  41004637 ttctaaagcatttcaaagccatttt-cggtcagtttttacctgtaatta-aaccgaagcatttccaaagacaatataaatcatacaacattgaaactcgg 41004734  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  41004735 tcataaacaagaaaaatataatatctttt 41004763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 1096686 - 1096806
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| |||||  |||||| | ||||||    
T  1096686 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaacattaaaactcggacataaa 1096784  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| | ||||||||    
T  1096785 caagataaatacagtatctttt 1096806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 7267405 - 7267325
Alignment:
Q  4 taaagcattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttata 84  Q
    |||||||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| |||| |||||    
T  7267405 taaagcatttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataatttata 7267325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7189916 - 7189846
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggca 72  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  7189916 ttctaaaacatttccaagccttttttcggccaatttttacctgtaa-ttaaaccagagcatttcgaaaggca 7189846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 24753980 - 24753860
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||  | ||||||    
T  24753980 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactgggacataaa 24753882  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  24753881 caagataaatacaatatctttt 24753860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 39951134 - 39951007
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| ||||||| ||| |||||| ||||||||  |||||||||||||| |||||||| | || | ||| |||||  |||||| |    
T  39951134 ttctaaaacatttccaagccttttttcgaccagtttttatctgtaatta-aaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcgg 39951036  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  39951035 acataaacaagataaatacaatatctttt 39951007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29398019 - 29398095
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||||| || || ||||||||||| |||||||| ||||    
T  29398019 ttctaaaacattttcaaatcatttttcggccagtttttacctgtaa-ttaaagcagagcatttcgaaaggcaaaataa 29398095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 41564447 - 41564379
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  41564447 atttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataa 41564379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 3795453 - 3795522
Alignment:
Q  9 cattttcaagccatttttc-ggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| ||||||||||||  ||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  3795453 catttccaagccatttttttggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 3795522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 209102 - 209169
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  209102 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 209169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 5351687 - 5351620
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  5351687 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 5351620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 10620091 - 10620158
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  10620091 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 10620158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 18000350 - 18000417
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  18000350 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 18000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 38950497 - 38950453
Alignment:
Q  33 atttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||    
T  38950497 atttttacctgtaatta-aaccagagcatttccaaaggtaatataa 38950453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23959000 - 23959127
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||| |||  ||||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  23959000 ttctaaagcatttccaagccatttttcgaccagattttacctgtaatta-aaccagagcatttccaaaggcaatataacttatacaacatttaaactcag 23959098  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||||||| ||||| ||||    
T  23959099 tcataaacaagtaaaatacaatatttttt 23959127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 29667792 - 29667669
Alignment:
Q  5 aaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcat 104  Q
    |||||| || |||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||| | |||||||||||||    
T  29667792 aaagcacttccaagccatttttcggccagtttttatctgtaattt-aaccagagcattttcaaaggcaatataacttatacaacttttaaactcagtcat 29667694  T
Q  105 aaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||| ||||||||||    
T  29667693 aaacaagtaaaatacaatatctttt 29667669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 7537296 - 7537423
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  7537296 ttctaaagcatttccaagccatttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 7537394  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  7537395 tcataaacaagaaaaatacaatatctttt 7537423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2258395 - 2258522
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||| ||||||||| |||||||| | ||  |||||| |||||||  ||||||||||||| |||||||||||||||| ||| ||||| |||||||||    
T  2258395 ttctaaagaattttcaagtcatttttcagtcagattttacttgtaatta-aaccagagcattttcaaaggcaatataactcatacaacatttaaactcag 2258493  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  2258494 tcataaacaagaaaaatacaatatctttt 2258522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 18610196 - 18610069
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||  ||||||||||||| |||||||||||||| | ||| |||||  |||||| |    
T  18610196 ttctaaagcatttccaagccatttttcggtcagtttttacatgtaatta-aaccagagcattttcaaaggcaatataaatcatacaacattgaaactcgg 18610098  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  18610097 tcataaacaagaaaaatacaatatctttt 18610069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 25141069 - 25140946
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| |||||||||||||||||||| | ||| || ||  |||||| |    
T  25141069 ttctaaagcattttcaagccatttttcggccaagttttacctgtaa-ttaaaccagaacatttccaaaggcaatataaatcatacaatattgaaactcgg 25140971  T
Q  101 tcataaacaagtaaaatagaatatc 125  Q
     |||||||||| |||||| ||||||    
T  25140970 ccataaacaagaaaaatacaatatc 25140946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 28362686 - 28362567
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| |||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||| | ||| |||||  |||||| |||||||||    
T  28362686 catttccaagccatttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataaatcatataacattgaaactcggtcataaac 28362588  T
Q  109 aagtaaaatagaatatctttt 129  Q
    ||| |||||| ||||||||||    
T  28362587 aagaaaaatacaatatctttt 28362567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29286312 - 29286439
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||| || ||||||||||||| |||||||||||||| | ||| ||| |  |||||| |    
T  29286312 ttctaaagcatttccaagccatttttcggccagtttttacttgtaa-ttaaaccagagcattttcaaaggcaatataaatcatacaacgttgaaactcgg 29286410  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    || |||||||| |||||| ||||||||||    
T  29286411 tcttaaacaagaaaaatacaatatctttt 29286439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2051137 - 2051264
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||| |||||||||||| |||||||||||| |||||| ||||||||  ||| |||||||||||||||||||||||| | ||| |||||  ||||||      
T  2051137 ttctaatgcattttcaagcaatttttcggccagtttttatctgtaattaaaac-agagcatttccaaaggcaatataaatcatacaacattgaaactcga 2051235  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||| |||| |||||| ||||||||||    
T  2051236 tcataaccaagaaaaatacaatatctttt 2051264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 11840213 - 11840086
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||| | ||| |||||  ||||||      
T  11840213 ttctaaaacatttccaagccatttttcggccagtttttacctgtaa-ttaaaccagaacatttccaaaggcaaaataattcatacaacattgaaactcga 11840115  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  11840114 acataaacaagataaatacaatatctttt 11840086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 26702656 - 26702547
Alignment:
Q  19 ccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaata 118  Q
    |||||||||| ||||||||||| |||||||  || ||||||||||||||||||| ||||| | ||| |||||| ||| || |||||||||||| ||||||    
T  26702656 ccatttttcgaccaatttttacatgtaatta-aatcagagcatttccaaaggcagtataaatcatacaacatagaaattcggtcataaacaagaaaaata 26702558  T
Q  119 gaatatctttt 129  Q
     ||||||||||    
T  26702557 caatatctttt 26702547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 8304570 - 8304674
Alignment:
Q  24 tttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaata 123  Q
    ||||||||| ||||||| |||||||  ||||||||||||||||||| ||||||| || ||| ||||| |  ||||||||||||||||| |||||| | ||    
T  8304570 tttcggccagtttttacatgtaatta-aaccagagcatttccaaagccaatatacctcatacaacatttgcactcagtcataaacaagaaaaatacatta 8304668  T
Q  124 tctttt 129  Q
    ||||||    
T  8304669 tctttt 8304674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 31151019 - 31150901
Alignment:
Q  10 attttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaaca 109  Q
    |||| |||||||||||||| ||| ||||||||| |||||  | ||||||||||||||||||||| |||| | ||| |||||  |||||| | ||||||||    
T  31151019 atttccaagccatttttcgcccagtttttacctataatta-atccagagcatttccaaaggcaaaataattcatacaacattgaaactcggacataaaca 31150921  T
Q  110 agtaaaatagaatatctttt 129  Q
    ||  ||||| ||||||||||    
T  31150920 aggtaaatacaatatctttt 31150901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 13382745 - 13382813
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||| ||||    
T  13382745 catttccaagccatttttcgaccagtttttacctgtaa-ttaaaccagagcatttccaaaggcaaaataa 13382813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 20448728 - 20448623
Alignment:
Q  23 ttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaat 122  Q
    ||||||||| ||||||| ||||||||  ||||||||||||| || ||||||||||||| ||| | ||| || ||| ||||||||||||| | |||| | |    
T  20448728 ttttcggcctatttttatctgtaattc-aaccagagcatttacagaggcaatataactcatacaccatttatacttagtcataaacaagaagaatacatt 20448630  T
Q  123 atctttt 129  Q
    |||||||    
T  20448629 atctttt 20448623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 1608410 - 1608478
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||||||||||| | |||||||    
T  1608410 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaaagtaatataa 1608478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 3502627 - 3502500
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||| | ||||||||| | ||||||||||||| ||  ||||||||||||| |||||||| | || | ||| |||||  |||||  |    
T  3502627 ttctaaaacatttacaagtcttttttcggctagtttttacctgtaa-ttacaccagagcatttcaaaaggcaaaacaattcatacaacattgaaacttgg 3502529  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  3502528 ccataaacaagataaatacaatatctttt 3502500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 18351585 - 18351530
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||| ||||||||||||| || ||||||||||||| ||||||||| ||||    
T  18351585 tttttcggccagtttttacctgtaa-ttaaaccagagcattttcaaaggcaaaataa 18351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 20439935 - 20439859
Alignment:
Q  34 tttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaag 111  Q
    ||||||||||| |||  |||||||||||||||| |||||||| |||| ||| | ||| || ||| |||||||||||||    
T  20439935 tttttacctgttattc-aaccagagcatttccagaggcaatacaactcatacaccatttatacttagtcataaacaag 20439859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 31771704 - 31771576
Alignment:
Q  1 ttctaaagcattttcaagccat-ttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactca 99  Q
    ||||||| ||||| |||||||| ||||| |||| ||||||||| ||| || ||  ||| |||||| |||||||| |||| | ||| |||||  ||||||     
T  31771704 ttctaaaacatttccaagccattttttcagccattttttacctttaa-ttaaagtagatcatttcgaaaggcaaaataattcatacaacattgaaactcg 31771606  T
Q  100 gtcataaacaagtaaaatagaatatctttt 129  Q
    | |||||||||| |||||| ||||| ||||    
T  31771605 gacataaacaagaaaaatacaatatttttt 31771576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10705357 - 10705484
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||||||| || |||| |||||||||| |||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| ||||| |||||||||    
T  10705357 ttctaaagcacttccaagtcatttttcggtcaatttttacatgtaattt-aaccaaagcatttctaaaggcaatataacttatacaacatttaaactcag 10705455  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||||||| ||||||||||    
T  10705456 tcataaacaagtaaaatacaatatctttt 10705484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34622608 - 34622735
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  34622608 ttctaaagcatttccaagccatttttcggtcagtttttacatgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 34622706  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||| ||| |||||| ||||| ||||    
T  34622707 tcataaataagaaaaatacaatatatttt 34622735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19044402 - 19044529
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||| |||||| |||||||||||||||| | ||||||||||||| || |||||||| ||||||||||||||||||| | ||| |||||  ||| |  |    
T  19044402 ttctaatgcatttccaagccatttttcggctagtttttacctgtaa-ttaaaccagagaatttccaaaggcaatataaatcatacaacattgaaattggg 19044500  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||| |||| |||||| ||||||||||    
T  19044501 tcataaccaagaaaaatacaatatctttt 19044529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 20710234 - 20710107
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||| |||||| |||||||||||||||| | ||||||||||||| || |||||||| ||||||||||||||||||| | ||| |||||  ||| |  |    
T  20710234 ttctaatgcatttccaagccatttttcggctagtttttacctgtaa-ttaaaccagagaatttccaaaggcaatataaatcatacaacattgaaattggg 20710136  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||| |||| |||||| ||||||||||    
T  20710135 tcataaccaagaaaaatacaatatctttt 20710107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 40928909 - 40928789
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| |||||||     
T  40928909 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggtcataat 40928811  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  40928810 caagataaatacaatatctttt 40928789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 17838598 - 17838471
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| ||||||||||| | ||||| |||||||  |||||||||||||| |||||||| | || | ||| |||||  |||||| |    
T  17838598 ttctaaaacatttccaagccttttttcggccagtatttacttgtaatta-aaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcgg 17838500  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  17838499 acataaacaagataaatacaatatctttt 17838471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 34742358 - 34742232
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| ||||||||||||||| || ||||||||||||| || ||  |||||||||| |||||||| | || | ||| |||||  |||||| |    
T  34742358 ttctaaaacatttccaagccatttttcggtcagtttttacctgtaa-ttaaagtagagcatttcgaaaggcaa-aaaattcatacaacattgaaactcgg 34742261  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||| ||||||||||    
T  34742260 acataaacaagaaaaatacaatatctttt 34742232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5537956 - 5538079
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||||||||||||||||||| || |||||||  |||| || || ||||||||||| ||||| || |||| | ||| |||||  |||||| |    
T  5537956 ttctaaaacattttcaagccatttttcggtcagtttttac--gtaa-ttaaagcagagcatttcgaaagggaaaataattcatacaacattgaaactcgg 5538052  T
Q  101 tcataaacaagtaaaatagaatatctt 127  Q
     |||||||||| |||||| ||||||||    
T  5538053 acataaacaagaaaaataaaatatctt 5538079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 18109736 - 18109630
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaa 121  Q
    ||||||||||| |||||| ||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| ||||||| ||||  ||||| ||    
T  18109736 tttttcggccagtttttatctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggtcataatcaagataaatacaa 18109638  T
Q  122 tatctttt 129  Q
    ||||||||    
T  18109637 tatctttt 18109630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36186463 - 36186416
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaatt 48  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||    
T  36186463 ttctaaagcattttcaagccatttttcggtcagtttttacctgtaatt 36186416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12111311 - 12111387
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||||||||||  ||||||| | || ||||||| ||||| || ||||||||||||| ||||||||||||||    
T  12111311 ttctaaagcattttcaagttatttttcagtcagtttttacttgtaa-ttaaaccagagcattttcaaaggcaatataa 12111387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 15070307 - 15070187
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| ||||||||||||| |  ||||||||||||||||||||| | |||| | ||| || ||  |||||| |||||||     
T  15070307 catttccaagccattttttcggccagtttttacctgtaaata-aaccagagcatttccaaaggctaaataattcatacaagattgaaactcggtcataat 15070209  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  15070208 caagataaatacaatatctttt 15070187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 30790963 - 30790895
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  30790963 atttccaagccattttttcggccattttttacctgtaatta-aaccagagcatttccaaaggtaatataa 30790895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13323678 - 13323551
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| ||||||||||||||| || ||||||||||||| || || ||||||||||| ||||| || |||| | ||| ||| |  ||||| ||    
T  13323678 ttctaaaacatttccaagccatttttcgggcagtttttacctgtaa-ttaaagcagagcatttcgaaaggtaaaataattcatacaacgttgaaactgag 13323580  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||| |||||| |||||| ||||| ||||    
T  13323579 acattaacaagaaaaatacaatatttttt 13323551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 29592674 - 29592780
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaa 121  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| || |||| | ||| || ||  |||||| | ||||||||||  ||||| ||    
T  29592674 tttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaaggaaaaataattcatacaagattgaaactcggacataaacaagataaatacaa 29592772  T
Q  122 tatctttt 129  Q
    ||| ||||    
T  29592773 tatttttt 29592780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 42503781 - 42503675
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaa 121  Q
    ||||||||||| ||||||||||||| || ||||||||||| ||||||||| | |||| | ||  || ||  |||||| ||||||| ||||  ||||| ||    
T  42503781 tttttcggccagtttttacctgtaa-ttaaaccagagcatctccaaaggctaaataattcatgcaagattgaaactcggtcataatcaagataaatacaa 42503683  T
Q  122 tatctttt 129  Q
    ||||||||    
T  42503682 tatctttt 42503675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 47742945 - 47742876
Alignment:
Q  9 cattttcaagccatttttc-ggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| ||||||||||||  ||||| |||||||||||||||  ||||||||||||| ||||||||| ||||    
T  47742945 catttccaagccatttttttggccagtttttacctgtaatta-aaccagagcattttcaaaggcaaaataa 47742876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 603897 - 603957
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaagg 70  Q
    |||| ||||||||||| ||||||| ||||||||||||| || ||||||| ||||||||||||    
T  603897 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagaacatttccaaagg 603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 43619797 - 43619864
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  43619797 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 43619864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 45767816 - 45767749
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  45767816 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 45767749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 43377256 - 43377129
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  43377256 ttctaaagcatttccaagccatttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 43377158  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  43377157 tcataaacaagaaaaatacaatatctttt 43377129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4867766 - 4867640
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||| ||||| ||||||| |||||||  ||| |||||||||||||||||||||||||| ||| ||||| |||||||||    
T  4867766 ttctaaagcatttccaagccattttttggccagtttttacttgtaatta-aactagagcatttccaaaggcaatataactcatacaacatttaaactcag 4867668  T
Q  101 tcataaacaagtaaaatagaatatcttt 128  Q
    ||||||||||| |||||| |||||||||    
T  4867667 tcataaacaagaaaaatacaatatcttt 4867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23578544 - 23578671
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| ||| ||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||  |||||| |    
T  23578544 ttctaaagcatttccaaaccatttttcagccagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaattatacaacattgaaactctg 23578642  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  23578643 tcataaacaagaaaaatacaatatctttt 23578671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2124287 - 2124417
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaatttt--aaccagagcatttccaaaggcaatataacttatagaacatataaactc 98  Q
    |||||| |||||| |||||||||||||||||| |||||||||| ||| ||  |||||||||||||||||||||||||||| | ||| |||||  ||||||    
T  2124287 ttctaatgcatttccaagccatttttcggccactttttacctggaatatttaaaccagagcatttccaaaggcaatataaatcatacaacattgaaactc 2124386  T
Q  99 agtcataaacaagtaaaatagaatatctttt 129  Q
     ||||||| |||| |||||| ||||||||||    
T  2124387 ggtcataaccaagaaaaatataatatctttt 2124417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 39574 - 39694
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  || ||||| ||||||    
T  39574 catttccaagccattttttcggccaatttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaacctcagacataaa 39672  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  39673 caagataaatacaatatctttt 39694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 7172541 - 7172463
Alignment:
Q  34 tttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagta 113  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  7172541 tttttacttgtaatta-aaccagagcattttcaaaggcaatataacttatacaacatttaaacttagtcataaacaagta 7172463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 31960017 - 31959897
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| | ||||||    
T  31960017 catttgcaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatataagattgaaactcggacataaa 31959919  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  31959918 caagataaatacaatatctttt 31959897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 39751177 - 39751297
Alignment:
Q  8 gcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    |||||| ||||| |||||| ||||| |||||| || |||||  ||||||||||||||||||| |||||||| | ||| |||||  |||||| |||||||     
T  39751177 gcatttccaagctattttttggccagtttttaactataatta-aaccagagcatttccaaagacaatataaatcatacaacattgaaactcggtcataac 39751275  T
Q  108 caagtaaaatagaatatctttt 129  Q
    |||| |||||| ||||||||||    
T  39751276 caagaaaaatacaatatctttt 39751297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 7344512 - 7344445
Alignment:
Q  10 attttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||    
T  7344512 atttccaagccatttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaaggtaatataa 7344445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34367021 - 34367148
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||| |||||||| | || | ||| | |||  |||||| |    
T  34367021 ttctaaaacatttccaagccttttttcggccagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacagcattgaaactcgg 34367119  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  34367120 acataaacaagataaatacaatatctttt 34367148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43679506 - 43679633
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||  ||||||| ||| ||||||||| |||||||  ||||| |  ||||||||||||||||||| | ||| || ||  |||||| |    
T  43679506 ttctaaagcatttccaaatcattttttggctaatttttacatgtaatta-aaccaaaatatttccaaaggcaatataaatcatacaaaattgaaactcgg 43679604  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  43679605 tcataaacaagaaaaatacaatatctttt 43679633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 23924083 - 23924151
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||||||||||||| || ||||||||||||| || ||| ||||||||||||||||||| ||||    
T  23924083 cattttcaagccatttttcggtcagtttttacctgtaa-ttaaactagagcatttccaaaggcaaaataa 23924151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 22661504 - 22661410
Alignment:
Q  34 tttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||||||  ||| |||||||||||||||||| ||| | || || ||||| || ||||||||||||||||| |||||| | ||||||||    
T  22661504 tttttacctgtaattc-aactagagcatttccaaaggcattattagttgtacaacatttatactcagtcataaacaagaaaaatacattatctttt 22661410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 30301251 - 30301319
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  30301251 atttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataa 30301319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 35962424 - 35962544
Alignment:
Q  9 cattttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||||||||||||||| ||||||||||||||| ||||||| | ||||||| ||| | |||||||| |||| | ||| |||||  |||||| |  |||||    
T  35962424 cattttcaagccattttttcggccaatttttacgtgtaattat-accagagtattacaaaaggcaaaataattcatacaacattaaaactcggatataaa 35962522  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  35962523 caagataaatacaatatctttt 35962544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 41743981 - 41744101
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| ||||||| |||||||  ||||||||||||||||||||||| |||| ||||| || ||  ||||||   ||||||    
T  41743981 catttccaagccattttttcggccagtttttacatgtaatta-aaccagagcatttccaaaggcaaaataatttatacaagattgaaactcgaacataaa 41744079  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||| ||||    
T  41744080 caagataaatacaatatttttt 41744101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 20549214 - 20549095
Alignment:
Q  9 cattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaac 108  Q
    ||||| ||||||||  |||||||| ||||||||||||| || ||||||||||||||||||| ||| |||| | ||| || ||  |||||| |  ||||||    
T  20549214 catttccaagccatcattcggccagtttttacctgtaa-ttaaaccagagcatttccaaagacaaaataattcatacaagattgaaactcggatataaac 20549116  T
Q  109 aagtaaaatagaatatctttt 129  Q
    |||  ||||| ||||||||||    
T  20549115 aagataaatacaatatctttt 20549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 31280942 - 31281029
Alignment:
Q  23 ttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaag 111  Q
    ||||||||| |||||||||||||| || |||||||||||||||| || ||||| |||| ||| | ||| || | || ||||||||||||    
T  31280942 ttttcggcctatttttacctgtaa-ttcaaccagagcatttccagagacaatacaactcatacaccatttataatcggtcataaacaag 31281029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 32375769 - 32375836
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  32375769 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 32375836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 41238958 - 41239085
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||| | ||||||||||||| | || |||| |||||||| || || ||||||||||| ||| |||| |||| | ||| |||||  || ||| |    
T  41238958 ttctaaaacatgtccaagccatttttcagtcagttttaacctgtaa-ttaaagcagagcatttcgaaatgcaaaataattcatacaacattgaatctcgg 41239056  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  41239057 acataaacaagacaaatacaatatctttt 41239085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 4774572 - 4774454
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||| |||||||||||||| | | |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  4774572 aagcatttccaagccatttttcgactagtttttacctgtaattt-aaccagagcatttccaaagccaatataacttatacaacatttaaactcagtcata 4774474  T
Q  106 aacaagtaaaatagaatatc 125  Q
    | ||||||||||| ||||||    
T  4774473 agcaagtaaaatacaatatc 4774454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 18578737 - 18578859
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||| |||||||||||||||| | ||||||| |||||||  |||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||    
T  18578737 aagcatttccaagccatttttcggctagtttttacttgtaattc-aaccagagtatttccaaaggcaatataacttatacaacatttaaactcactcata 18578835  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    ||||||||||||| ||||||||||    
T  18578836 aacaagtaaaatacaatatctttt 18578859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 44051056 - 44050929
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  44051056 ttctaaagcatttccaagccatttttcggccagtttttacttgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 44050958  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  44050957 tcataaacaagaaaaatacaatatctttt 44050929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 38460535 - 38460662
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||  ||||||||||||| |||||||||||||| | ||| |||||  |||||| |    
T  38460535 ttctaaagcatttccaagccatttttcggtcagtttttacctgtaatta-aaccagagcattttcaaaggcaatataaatcatacaacattgaaactcgg 38460633  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  38460634 tcataaacaagaaaaatataatatctttt 38460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 10423369 - 10423254
Alignment:
Q  2 tctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagt 101  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||||||| | ||| |||||  |||||| ||    
T  10423369 tctaaagcaattccaagccatttttcggccagtttttacctgtaatta-aaccagagcattttcaaaggcaatataaatcatacaacattgaaactcggt 10423271  T
Q  102 cataaacaagtaaaata 118  Q
    |||||||||| ||||||    
T  10423270 cataaacaagaaaaata 10423254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 50905126 - 50905010
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||| | ||| |||||  ||||||      
T  50905126 ttctaatgcatttccaagccatttttcggccaatttttacctgtaa-ttaaaccagagcatttctaaatgcaatataaatcatacaacattgaaactcga 50905028  T
Q  101 tcataaacaagtaaaata 118  Q
     |||||||||| ||||||    
T  50905027 acataaacaagaaaaata 50905010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24414944 - 24415071
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||| |||| || ||||||||||||| || ||||||| |||||||||||  ||||||||| | | ||||| ||||||||     
T  24414944 ttctaaagcatttccaagccatttatcggacagtttttacctgtaa-ttaaaccagaacatttccaaagataatataactcagaaaacatttaaactcaa 24415042  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    |||||| |||| |||||| ||||| ||||    
T  24415043 tcataagcaagaaaaatacaatatttttt 24415071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 37395173 - 37395053
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    |||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| || |||| | ||| |||||  |||||| | ||||||    
T  37395173 cattttcaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggaaaaataattcatacaacattgaaactcggacataaa 37395075  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  37395074 caagataaatacaatatctttt 37395053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 3408196 - 3408076
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| ||||||| |||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| |||||||     
T  3408196 catttccaagccattttttcggccagtttttacttgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggtcataat 3408098  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  3408097 caagataaatacaatatctttt 3408076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 50278787 - 50278659
Alignment:
Q  1 ttctaaagcattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactca 99  Q
    |||||||  ||||||||||||||||| ||  || |||||||||||||||  ||| |||||||||| |||||||| ||||  |||| |||||  ||||||     
T  50278787 ttctaaaatattttcaagccattttttcgatcagtttttacctgtaattaaaac-agagcatttcgaaaggcaaaataatctatacaacattgaaactcg 50278689  T
Q  100 gtcataaacaagtaaaatagaatatctttt 129  Q
    | |||||||||| |||||| ||||||||||    
T  50278688 gacataaacaagaaaaatacaatatctttt 50278659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 37016008 - 37016135
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| |||||||||| | |||||| |||| ||||||||||||| || |||||||||||||| |||||||| | || | ||| | |||  |||||| |    
T  37016008 ttctaaaacattttcaagtcttttttcagccagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacatcattgaaactcgg 37016106  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  37016107 acataaacaagataaatacaatatctttt 37016135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 15995838 - 15995907
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  15995838 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 15995907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 51642161 - 51642243
Alignment:
Q  47 ttttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||||||||| |||||||||||||| | ||| || ||  ||||||  ||||||||||| |||||| ||||||||||    
T  51642161 ttttaaccagagcattttcaaaggcaatataaatcatacaatattgaaactcgatcataaacaagaaaaatacaatatctttt 51642243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 49563958 - 49564026
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  49563958 atttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataa 49564026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 51492181 - 51492308
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| |||||| ||||  |||||||||||| || |||||||||||||| |||||||| |||| | ||| |||||  ||||||      
T  51492181 ttctaaaacatttccaagccttttttcagccagattttacctgtaa-ttaaaccagagcatttcgaaaggcaaaataattcatacaacattaaaactcga 51492279  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  || || ||||||||||    
T  51492280 acataaacaagataagtacaatatctttt 51492308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 19069303 - 19069372
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| || ||| ||||||| |||||||  ||||||||||||||||||||||| ||||    
T  19069303 catttccaagccattttttcgaccagtttttacttgtaatta-aaccagagcatttccaaaggcaaaataa 19069372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1647 - 1520
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  1647 ttctatagcatttccaagccatttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 1549  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| ||||||||||    
T  1548 tcataaacaagaaaaatacaatatctttt 1520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6489438 - 6489565
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||  |||||  |||||||||||||||||||||||||||| | ||| |||||  |||||| |    
T  6489438 ttctaaagcatttccaagccatttttcggccagtttttaccgctaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcgg 6489536  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
    ||||||||||| |||||| | ||||||||    
T  6489537 tcataaacaagaaaaatacattatctttt 6489565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 600507 - 600380
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||  |||||||| |||| | ||| |||||  |||||| |    
T  600507 ttctaaaacatttccaagccatttttcggccaatttttacctgtaa-ttaaaccagagcatttttaaaggcaaaataattcatacaacattgaaactcgg 600409  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||| ||||||||||    
T  600408 acataaacaagaaaaatacaatatctttt 600380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 66988 - 67110
Alignment:
Q  6 aagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcata 105  Q
    |||||||| ||||||||||||||| || |||||||||||||||  |||||||||| | ||||| ||||||||| | ||| ||||| |||||||| | |||    
T  66988 aagcatttccaagccatttttcggtcagtttttacctgtaatta-aaccagagcaatcccaaatgcaatataattcatacaacatttaaactcacttata 67086  T
Q  106 aacaagtaaaatagaatatctttt 129  Q
    ||||||||||||| ||||||||||    
T  67087 aacaagtaaaatacaatatctttt 67110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2271464 - 2271592
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||||| || |||||||||||||| |||||||| | || | ||| |||||  |||||  |    
T  2271464 ttctaaaacattttcaagccttttttcggccagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacaacattgaaacttgg 2271562  T
Q  101 tcataaacaag-taaaatagaatatctttt 129  Q
     |||||||||| ||||||| ||||||||||    
T  2271563 acataaacaagataaaatacaatatctttt 2271592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 21951909 - 21952036
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| || || |||||||||||||||||| |||| || |||||||  |||||||||||||||||| ||||||||| | ||| |||||  ||||||      
T  21951909 ttctaaaacaattccaagccatttttcggccagttttgacttgtaatta-aaccagagcatttccaaatgcaatataaatcatacaacattgaaactcga 21952007  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||| ||||||||||    
T  21952008 acataaacaagaaaaatacaatatctttt 21952036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 7841212 - 7841332
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| || ||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| |||||  |||||||| ||||||    
T  7841212 catttccaagccattttttcgaccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaacattgaaactcagacataaa 7841310  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| | ||||||||    
T  7841311 caagataaatacagtatctttt 7841332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 3953170 - 3953103
Alignment:
Q  10 attttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||    
T  3953170 atttccaagccatttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaaggtaatataa 3953103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 16647136 - 16647010
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| ||||||||||| ||||||||||||| |||||| || |||||||||||||| |||||||| | || | ||| |||||  ||||||||    
T  16647136 ttctaaaacatttccaagccattttccggccaatttttatctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcag 16647038  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||| |||  ||||| ||||||||||    
T  16647037 acataaa-aagataaatataatatctttt 16647010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36134246 - 36134119
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||  ||||||||||| |||||||||||||||  || ||||||||||| |||||||| |||| | ||| |||||  |||||| |    
T  36134246 ttctaaaacatttccaagctttttttcggccagtttttacctgtaatta-aatcagagcatttcgaaaggcaaaataattcatacaacattgaaactcgg 36134148  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  36134147 acataaacaagataaatacaatatctttt 36134119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 42166375 - 42166248
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||  |||||||| | || | ||| |||||  |||||| |    
T  42166375 ttctaaaacatttccaagccttttttcggccagtttttacctgtaa-ttaaaccagagcattttgaaaggcaaaacaattcatacaacattgaaactcgg 42166277  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  42166276 acataaacaagataaatacaatatctttt 42166248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47070578 - 47070705
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||||||||||||| | ||||||||||||| || |||||||||||||| |||||||| | || | ||| |||||  ||||||      
T  47070578 ttctaaaacatttccaagccatttttcggctagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacaacattgaaactcga 47070676  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  47070677 acataaacaagataaatacaatatctttt 47070705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 50213567 - 50213694
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| |||||  |||| |||||||||||| ||||||||||||| || || ||||||||||| |||||||| |||| | ||| |||||  |||||| |    
T  50213567 ttctaaaacatttctaagctatttttcggccagtttttacctgtaa-ttaaagcagagcatttcgaaaggcaaaataattcatacaacattgaaactcgg 50213665  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     |||||||||| |||||  ||||||||||    
T  50213666 acataaacaagaaaaatgcaatatctttt 50213694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 2857943 - 2857869
Alignment:
Q  4 taaagcattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||||||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  2857943 taaagcatttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 2857869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 9426717 - 9426791
Alignment:
Q  4 taaagcattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||||||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  9426717 taaagcatttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataa 9426791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 14402939 - 14402833
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaaaatagaa 121  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| | ||||||||||  ||||| ||    
T  14402939 tttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggacataaacaagataaatacaa 14402841  T
Q  122 tatctttt 129  Q
    ||||||||    
T  14402840 tatctttt 14402833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 4002461 - 4002341
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||| | |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| | ||||||    
T  4002461 catttccaagccattttttcggcaagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggacataaa 4002363  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  4002362 caagataaatacaatatctttt 4002341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 48246528 - 48246648
Alignment:
Q  9 cattttcaagccatttttc-ggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||||||||||||||||| || || |||||||||||||||  ||||||||||||| ||||||||| |||| | ||| |||||  |||||||| |||||     
T  48246528 cattttcaagccatttttccggtcagtttttacctgtaatta-aaccagagcattttcaaaggcaaaataattcataaaacattgaaactcagacataag 48246626  T
Q  108 caagtaaaatagaatatctttt 129  Q
    |||   ||||| ||||||||||    
T  48246627 caatataaatacaatatctttt 48246648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 52387909 - 52387980
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaa 73  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||| ||||||||    
T  52387909 ttctaaaacatttccaagccttttttcggccagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaa 52387980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 6745281 - 6745213
Alignment:
Q  10 attttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||||||    
T  6745281 atttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggtaatataa 6745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9473912 - 9473804
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||| || ||||||| |||||| |||||||| | || | ||| |||||  |||||| |    
T  9473912 ttctaaaacatttccaagccttttttcggccagtttttacctgtaa-ttaaaccagatcatttcgaaaggcaaaacaattcatacaacattgaaactcgg 9473814  T
Q  101 tcataaacaa 110  Q
     |||||||||    
T  9473813 acataaacaa 9473804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 36812954 - 36813072
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||| ||  ||||||||||||||||||||||| ||||   ||| || ||  |||||| | ||||||    
T  36812954 catttccaagccattttttcggccagtttttacctgtagtta-aaccagagcatttccaaaggcaaaataatccatacaagattgaaactcggacataaa 36813052  T
Q  108 caagtaaaatagaatatctt 127  Q
    ||||  ||||| ||||||||    
T  36813053 caagataaatacaatatctt 36813072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 13743384 - 13743453
Alignment:
Q  9 cattttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| ||||||||||| ||||||| ||||||||||||| || ||| ||||||||||||||||||| ||||    
T  13743384 catttccaagccattttttcggccagtttttacctgtaa-ttaaactagagcatttccaaaggcaaaataa 13743453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 50957649 - 50957580
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| |||||||||||| |||||| ||||||||||||| || || |||||||||||||||||||| ||||    
T  50957649 catttccaagccattttttcggccagtttttacctgtaa-ttaaatcagagcatttccaaaggcaaaataa 50957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 30943307 - 30943375
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||||||||||| | |||||||    
T  30943307 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaaagtaatataa 30943375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 2743528 - 2743583
Alignment:
Q  22 tttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||||||||| ||||    
T  2743528 tttttcggccagtttttacttgtaatta-aaccagagcatttccaaaggcaaaataa 2743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4004954 - 4005025
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaa 73  Q
    ||||||| ||||| |||||  ||||||||||| ||||||| ||||| || |||||||||||||| ||||||||    
T  4004954 ttctaaaacatttccaagcattttttcggccagtttttacatgtaa-ttaaaccagagcatttcgaaaggcaa 4005025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 8156626 - 8156693
Alignment:
Q  10 attttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    |||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||    
T  8156626 atttccaagccattttttcggccagtttttacctgtaa-ttaaaccagagca-ttccaaaggtaatataa 8156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 20075 - 19947
Alignment:
Q  1 ttctaaagcattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactca 99  Q
    ||||||||||||| |||||  ||||| ||| || |||||||||||||||  |||||||||||||||||||||||||||| | ||| |||||  ||||||     
T  20075 ttctaaagcatttccaagcttttttttcggtcagtttttacctgtaatta-aaccagagcatttccaaaggcaatataaatcatacaacattgaaactcg 19977  T
Q  100 gtcataaacaagtaaaatagaatatctttt 129  Q
    |||||||||||| |||||| ||||||||||    
T  19976 gtcataaacaagaaaaatacaatatctttt 19947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 21762 - 21835
Alignment:
Q  4 taaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||||||||  ||||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||    
T  21762 taaagcatttctaagccatttttcggccagtttttacctgtaa-ttaaaccagagcatttccaaaagcaatataa 21835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 22518 - 22638
Alignment:
Q  9 cattttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| |||| | ||| || ||  |||||| | |||||     
T  22518 catttccaagccattttttcggccaatttttacctgtaa-ttaaaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggacataat 22616  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  22617 caagataaatacaatatctttt 22638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 12513 - 12640
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||| ||| |||| | || | ||| |||||  |||||| |    
T  12513 ttctaaaacatttccaagccttttttcggccagtttttacctgtaa-ttaaaccagagcatttcgaaaagcaaaacaattcatacaacattgaaactcgg 12611  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  12612 acataaacaagataaatacaatatctttt 12640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 15904 - 15791
Alignment:
Q  16 aagccattt-ttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaacaagtaa 114  Q
    ||||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||| |||| | ||| || ||  |||||| | ||||||||||  |    
T  15904 aagccatttgttcggccagtttttacctgtaatta-aaccagagcatttccaaaggcaaaataattcatacaagattgaaactcggacataaacaagata 15806  T
Q  115 aatagaatatctttt 129  Q
    |||| ||||||||||    
T  15805 aatacaatatctttt 15791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 5283 - 5163
Alignment:
Q  9 cattttcaagccattttt-cggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcagtcataaa 107  Q
    ||||| |||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||| | |||| | ||| || ||  |||||| |||||||     
T  5283 catttccaagccattttttcggccagtttttacctgtaatta-aaccagagcatttccaaaggctaaataattcatacaagattgaaactcggtcataat 5185  T
Q  108 caagtaaaatagaatatctttt 129  Q
    ||||  ||||| ||||||||||    
T  5184 caagataaatacaatatctttt 5163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 236199 - 236072
Alignment:
Q  1 ttctaaagcattttcaagccatttttcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataacttatagaacatataaactcag 100  Q
    ||||||| ||||| ||| || ||||||| ||| ||||||||||||| || |||||||||||||| |||||||| | || | ||| || ||  ||||||||    
T  236199 ttctaaaacatttccaaaccttttttcgaccagtttttacctgtaa-ttaaaccagagcatttcgaaaggcaaaacaattcatacaatattgaaactcag 236101  T
Q  101 tcataaacaagtaaaatagaatatctttt 129  Q
     ||||||||||  ||||| ||||||||||    
T  236100 acataaacaagataaatacaatatctttt 236072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 8316 - 8385
Alignment:
Q  9 cattttcaagccatttt-tcggccaatttttacctgtaattttaaccagagcatttccaaaggcaatataa 78  Q
    ||||| ||||||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||| ||||    
T  8316 catttccaagccattttttcggccagtttttacctgtaa-ttaaaccaaagcatttccaaaggcaaaataa 8385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University