View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1413_low_3 (Length: 682)
Name: NF1413_low_3
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 659; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Original strand, 14812584 - 14813246
Alignment:
| Q |
1 |
tcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812584 |
tcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgatt |
14812683 |
T |
|
| Q |
101 |
caagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14812684 |
caagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatg |
14812783 |
T |
|
| Q |
201 |
tccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14812784 |
tccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgt |
14812883 |
T |
|
| Q |
301 |
attgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaatttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14812884 |
attgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaatttt |
14812983 |
T |
|
| Q |
401 |
ctatccggattaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14812984 |
ctatccggattaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactct |
14813083 |
T |
|
| Q |
501 |
aatcaatcctttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacccctataaaactcagcc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14813084 |
aatcaatcctttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagcc |
14813183 |
T |
|
| Q |
601 |
gaaacttcgatgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14813184 |
gaaacttcgatgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
14813246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Original strand, 15259579 - 15260241
Alignment:
| Q |
1 |
tcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15259579 |
tcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgatt |
15259678 |
T |
|
| Q |
101 |
caagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15259679 |
caagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatg |
15259778 |
T |
|
| Q |
201 |
tccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15259779 |
tccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgt |
15259878 |
T |
|
| Q |
301 |
attgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaatttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259879 |
attgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaatttt |
15259978 |
T |
|
| Q |
401 |
ctatccggattaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259979 |
ctatccggattaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactct |
15260078 |
T |
|
| Q |
501 |
aatcaatcctttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacccctataaaactcagcc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15260079 |
aatcaatcctttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagcc |
15260178 |
T |
|
| Q |
601 |
gaaacttcgatgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15260179 |
gaaacttcgatgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
15260241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 14749960 - 14749996
Alignment:
| Q |
407 |
ggattaatctaagcatgtggttttcaataatctcctt |
443 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14749960 |
ggattaatctaagcatgtgattttcaatagtctcctt |
14749996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 14757879 - 14757915
Alignment:
| Q |
407 |
ggattaatctaagcatgtggttttcaataatctcctt |
443 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14757879 |
ggattaatctaagcatgtgattttcaatcatctcctt |
14757915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 647; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 5 - 663
Target Start/End: Complemental strand, 17521592 - 17520934
Alignment:
| Q |
5 |
caccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521592 |
caccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaag |
17521493 |
T |
|
| Q |
105 |
ttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtcca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521492 |
ttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttcatgtcca |
17521393 |
T |
|
| Q |
205 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521392 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
17521293 |
T |
|
| Q |
305 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521292 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
17521193 |
T |
|
| Q |
405 |
ccggattaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521192 |
ccggattaatctaagcatgtggttttcaataatctccttgtacattgcattataaatcttcttttgacttatggaatccaagtagtggttcactctaatc |
17521093 |
T |
|
| Q |
505 |
aatcctttaatcaaatgattctcagctttccgtagataatcgccacaatcacaatattcacttaacttttggaactcacccctataaaactcagccgaaa |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17521092 |
aatcctttaatcaaatgattctcagctttccatagataatcgccacaatcacaatattcacttaacttttggaactcacctctataaaactcagccgaaa |
17520993 |
T |
|
| Q |
605 |
cttcgatgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcttttagc |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17520992 |
cttcgatgaaaggaatctcaaataatgtctcataaactgaatcacctaaatcctttagc |
17520934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 17621904 - 17621964
Alignment:
| Q |
383 |
ttactaaccaagaattttctatccggattaatctaagcatgtggttttcaataatctcctt |
443 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17621904 |
ttactaacccagaattttccatatggattaatctaagcatgtcattttcaataatctcctt |
17621964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 17570656 - 17570620
Alignment:
| Q |
407 |
ggattaatctaagcatgtggttttcaataatctcctt |
443 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17570656 |
ggattaatctaagcatgtgattttcaatcatctcctt |
17570620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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