View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_5 (Length: 557)
Name: NF1413_low_5
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_5 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 17832684 - 17832983
Alignment:
| Q |
1 |
ctgggtattttcagcatgtaaactgtttgcagcaaagttttctgatggtacaatacttcagcagagcataaaggcatgcattttgttcctagattttgat |
100 |
Q |
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| T |
17832684 |
ctgggtattttcagcatgtaaactgtttgcagcaaagttttctgatggtacaatactgcagcagagcataaaggcatgcattttgttcctagattttgat |
17832783 |
T |
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| Q |
101 |
caatctctgcgtaatctttcatagtttctattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctc |
200 |
Q |
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| T |
17832784 |
caatctctgcgtaatctttcatagtttctattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctc |
17832883 |
T |
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| Q |
201 |
aatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgatttagtatttatacaaattggatgtatgttgcctttaaga |
300 |
Q |
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| T |
17832884 |
aatgcaagtgtgattacaatgaagtattggagttctttacatttaagactcactatttgatttagtatttatacaaattggatgtatgttgcctttaaga |
17832983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 324 - 547
Target Start/End: Original strand, 17833004 - 17833227
Alignment:
| Q |
324 |
aaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctaccatgtaagtgttgttgac |
423 |
Q |
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| T |
17833004 |
aaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctatcatgtaagtgttgctgac |
17833103 |
T |
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| Q |
424 |
atattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttctggatttttattttcaaaacaaatagtaggattg |
523 |
Q |
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| T |
17833104 |
acattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttttggatttttattttcaaaacaaatagtaggattg |
17833203 |
T |
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| Q |
524 |
tagttgtggcttatgttgcctttg |
547 |
Q |
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| T |
17833204 |
tagttgtggcttatgttgcctttg |
17833227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 7391030 - 7391119
Alignment:
| Q |
174 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
263 |
Q |
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| T |
7391030 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
7391119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 19586082 - 19585993
Alignment:
| Q |
174 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
263 |
Q |
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| T |
19586082 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
19585993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 440 - 529
Alignment:
| Q |
174 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
263 |
Q |
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| T |
440 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacaattaactattgaagatttttaaatttaagactccctgtttcattt |
529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 11657815 - 11657726
Alignment:
| Q |
174 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
263 |
Q |
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| T |
11657815 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactacctgtttcattt |
11657726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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