View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_6 (Length: 543)
Name: NF1413_low_6
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 202 - 541
Target Start/End: Original strand, 47927862 - 47928201
Alignment:
| Q |
202 |
tatgatgaaatgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacattatatattatatagttaatc |
301 |
Q |
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| T |
47927862 |
tatgatgaattgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacattatatattatatagttaatc |
47927961 |
T |
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| Q |
302 |
aatatctgatttcaagcacataaaggagggtttcttccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaac |
401 |
Q |
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| T |
47927962 |
aatatctgatttcaagcacataaaggagggtttcttccagctcctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaac |
47928061 |
T |
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| Q |
402 |
aatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaa |
501 |
Q |
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| T |
47928062 |
aatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaa |
47928161 |
T |
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| Q |
502 |
tcgaccacttgctgcctctccactacccatctgtgctcct |
541 |
Q |
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| T |
47928162 |
tcgaccacttgctgcatctccactacccatctgtgttcct |
47928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 337 - 502
Target Start/End: Original strand, 47918235 - 47918400
Alignment:
| Q |
337 |
tccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgat |
436 |
Q |
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| T |
47918235 |
tccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgat |
47918334 |
T |
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| Q |
437 |
ggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaat |
502 |
Q |
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| T |
47918335 |
gggtacttaagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaat |
47918400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 47927678 - 47927800
Alignment:
| Q |
18 |
ctcatactagagattaaatttgtaacaatatcttcgtaaagggaggtgtatattaaattggcatctctcttatatgtcatttaactattaacaatacact |
117 |
Q |
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| T |
47927678 |
ctcataatagagattaaatttgtaacaatatcttcgtaaagggagatgtatattaaattggcatctctcttatatgtcatttaactattgacaatacagt |
47927777 |
T |
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| Q |
118 |
ctcgcagcttataagatatgtgc |
140 |
Q |
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| T |
47927778 |
ctcgcagcttataagatatgtgc |
47927800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 347 - 541
Target Start/End: Original strand, 47935441 - 47935635
Alignment:
| Q |
347 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
446 |
Q |
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| T |
47935441 |
ccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttga |
47935540 |
T |
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| Q |
447 |
gagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
541 |
Q |
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| T |
47935541 |
gagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcct |
47935635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 354 - 541
Target Start/End: Original strand, 47946590 - 47946777
Alignment:
| Q |
354 |
agaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttg |
453 |
Q |
| |
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|||| |||||||||||||||||| || |||| ||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||||| |||| || |
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| T |
47946590 |
agaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttc |
47946689 |
T |
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| Q |
454 |
tgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
541 |
Q |
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| T |
47946690 |
tgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct |
47946777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 37432026 - 37431956
Alignment:
| Q |
211 |
atgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacat |
281 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37432026 |
atgaatgattagataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacat |
37431956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 347 - 474
Target Start/End: Original strand, 47909079 - 47909206
Alignment:
| Q |
347 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
446 |
Q |
| |
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|||||| |||| ||||| |||||||||||||||||| ||| |||||||||||||| | || ||| |||||||||| |||| ||| ||| ||||||| |
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| T |
47909079 |
ccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggctctccagcatgtgtggttacgaattgtgggtacttaa |
47909178 |
T |
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| Q |
447 |
gagcttgtgaataatctttaattctcac |
474 |
Q |
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| T |
47909179 |
gagcttgtgagtaatctttaattctcac |
47909206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 37432148 - 37432100
Alignment:
| Q |
88 |
tatatgtcatttaactattaacaatacactctcgcagcttataagatat |
136 |
Q |
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|||||||| |||||||||||||||||||| |||||| |||||||||||| |
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| T |
37432148 |
tatatgtcgtttaactattaacaatacacactcgcatcttataagatat |
37432100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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