View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1413_low_8 (Length: 448)

Name: NF1413_low_8
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1413_low_8
NF1413_low_8
[»] chr5 (8 HSPs)
chr5 (9-432)||(34436877-34437295)
chr5 (400-434)||(21139151-21139185)
chr5 (400-432)||(3389188-3389220)
chr5 (400-432)||(22522804-22522836)
chr5 (400-432)||(31280045-31280077)
chr5 (400-432)||(31877954-31877986)
chr5 (400-432)||(40715952-40715984)
chr5 (400-432)||(42473920-42473952)
[»] chr3 (17 HSPs)
chr3 (117-357)||(30666875-30667115)
chr3 (400-432)||(10922311-10922343)
chr3 (400-434)||(24120423-24120457)
chr3 (400-432)||(913603-913635)
chr3 (400-428)||(11358264-11358292)
chr3 (400-432)||(16663239-16663271)
chr3 (400-432)||(25727970-25728002)
chr3 (400-432)||(34899123-34899155)
chr3 (400-432)||(35126272-35126304)
chr3 (400-432)||(38130962-38130994)
chr3 (400-432)||(40575612-40575644)
chr3 (400-432)||(41817525-41817557)
chr3 (400-432)||(45431974-45432006)
chr3 (400-432)||(48315027-48315059)
chr3 (400-432)||(48656902-48656934)
chr3 (400-432)||(48849766-48849798)
chr3 (400-432)||(51882203-51882235)
[»] chr8 (7 HSPs)
chr8 (400-432)||(18533695-18533727)
chr8 (400-432)||(12748927-12748959)
chr8 (400-432)||(15020787-15020819)
chr8 (400-432)||(23159467-23159499)
chr8 (400-432)||(32051535-32051567)
chr8 (400-432)||(33105417-33105449)
chr8 (400-432)||(42172246-42172278)
[»] chr1 (9 HSPs)
chr1 (400-432)||(1794622-1794654)
chr1 (403-432)||(26256095-26256124)
chr1 (400-432)||(4302478-4302510)
chr1 (400-432)||(12268987-12269019)
chr1 (400-432)||(25532999-25533031)
chr1 (400-432)||(29042563-29042595)
chr1 (400-432)||(34521193-34521225)
chr1 (400-432)||(34595898-34595930)
chr1 (400-432)||(46707898-46707930)
[»] chr2 (12 HSPs)
chr2 (400-434)||(27848182-27848216)
chr2 (400-432)||(8091161-8091193)
chr2 (400-432)||(11175811-11175843)
chr2 (400-432)||(18693665-18693697)
chr2 (400-432)||(20565078-20565110)
chr2 (400-432)||(25186245-25186277)
chr2 (400-432)||(29544653-29544685)
chr2 (400-432)||(31543038-31543070)
chr2 (400-432)||(31815890-31815922)
chr2 (400-432)||(36359340-36359372)
chr2 (404-432)||(39068715-39068743)
chr2 (400-432)||(42791321-42791353)
[»] chr7 (13 HSPs)
chr7 (403-432)||(1285075-1285104)
chr7 (400-432)||(7670460-7670492)
chr7 (400-432)||(10244753-10244785)
chr7 (400-432)||(14046614-14046646)
chr7 (400-432)||(14356644-14356676)
chr7 (400-432)||(18714474-18714506)
chr7 (400-432)||(19599171-19599203)
chr7 (400-432)||(19626528-19626560)
chr7 (400-432)||(20085762-20085794)
chr7 (400-432)||(27462439-27462471)
chr7 (400-432)||(39280821-39280853)
chr7 (400-432)||(42829237-42829269)
chr7 (400-432)||(46737811-46737843)
[»] chr4 (17 HSPs)
chr4 (403-432)||(19854591-19854620)
chr4 (400-433)||(54294425-54294458)
chr4 (400-432)||(675944-675976)
chr4 (400-432)||(7230306-7230338)
chr4 (400-432)||(8027400-8027432)
chr4 (400-432)||(11949766-11949798)
chr4 (400-432)||(12322699-12322731)
chr4 (400-432)||(14197434-14197466)
chr4 (400-432)||(17423180-17423212)
chr4 (400-432)||(19479480-19479512)
chr4 (400-432)||(20383514-20383546)
chr4 (400-432)||(20799397-20799429)
chr4 (400-432)||(25783452-25783484)
chr4 (400-432)||(36490594-36490626)
chr4 (400-432)||(44815967-44815999)
chr4 (400-432)||(49041984-49042016)
chr4 (400-432)||(49953406-49953438)
[»] scaffold1127 (1 HSPs)
scaffold1127 (400-432)||(1168-1200)
[»] scaffold0011 (1 HSPs)
scaffold0011 (400-432)||(185289-185321)
[»] chr6 (4 HSPs)
chr6 (400-432)||(8569735-8569767)
chr6 (400-432)||(8809332-8809364)
chr6 (400-432)||(12215779-12215811)
chr6 (400-432)||(33824907-33824939)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 34437295 - 34436877
Alignment:
Q  9 gataatactgtgatattgcagttgagtttgaatagctctggagcagtagcttcagttccaaattcatcattctttggaaccagcttaaagaaagttacct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34437295 gataatactgtgatattgcagttgagtttgaatagctctggagcagtagcttcagttccaagttcatcattctttggaaccagcttaaagaaagttacct 34437196  T
Q  109 cgaggttaccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattgatgaaagcaagcaaactgacaaagacaaatggagaggttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  34437195 cgaggttaccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattaatgaaagcaagcaaactgacaaagacagatggagaggttt 34437096  T
Q  209 ggcctatgatacttcagatgatcaacaagacatcacaagagggaagggtatggttgatacagttttccaagcaccacaagattctggaactcattatgca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34437095 ggcctatgatacttcagatgatcaacaagacatcacaagagggaagggtatggttgatacagttttccaagcaccacaagattctggaactcattatgca 34436996  T
Q  309 gtcatgagttcttatgagtacattagtaccggacttagacagtaagtgagagatatacttaacatttttcttttggtggtgggcnnnnnnntttgaaccc 408  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||       |||||||||    
T  34436995 gtcatgagttcttatgagtacattagtactggacttagacagtaagt--gagatatacttaacttttttcttttggtggtgggc---ggggtttgaaccc 34436901  T
Q  409 cggatcttgcatatattatgcatt 432  Q
    |||  |||||||||||||||||||    
T  34436900 cggcccttgcatatattatgcatt 34436877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Original strand, 21139151 - 21139185
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatttg 434  Q
    ||||||||||||| |||||||||||||||||||||    
T  21139151 tttgaaccccggaccttgcatatattatgcatttg 21139185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 3389220 - 3389188
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||| ||||||||||||||||||||||    
T  3389220 tttgaaccccagatcttgcatatattatgcatt 3389188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 22522804 - 22522836
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  22522804 tttgaaccccggaccttgcatatattatgcatt 22522836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 31280077 - 31280045
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||| ||||||||||||||||||    
T  31280077 tttgaaccccggatattgcatatattatgcatt 31280045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 31877986 - 31877954
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||| ||||||||||||||||||||||    
T  31877986 tttgaacccctgatcttgcatatattatgcatt 31877954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 40715952 - 40715984
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  40715952 tttgaaccccggaccttgcatatattatgcatt 40715984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 42473952 - 42473920
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  42473952 tttgaaccccggaccttgcatatattatgcatt 42473920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 117 - 357
Target Start/End: Complemental strand, 30667115 - 30666875
Alignment:
Q  117 ccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattgatgaaagcaagcaaactgacaaagacaaatggagaggtttggcctatg 216  Q
    ||||||||||| ||||| || ||||| |||||| || |||||   ||||| |||||  | || || || |||  ||||| |||||| |||||||||||||    
T  30667115 ccaaacacaaaagtttcctcaggaagcttcaaagtttttgctaaagagatcgatgagggtaaacagaccgacggagacagatggaggggtttggcctatg 30667016  T
Q  217 atacttcagatgatcaacaagacatcacaagagggaagggtatggttgatacagttttccaagcaccacaagattctggaactcattatgcagtcatgag 316  Q
    |||  |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30667015 atatatcagatgaccaacaagacatcacaagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgag 30666916  T
Q  317 ttcttatgagtacattagtaccggacttagacagtaagtga 357  Q
    ||||||||||||| ||||||| ||||||| ||||| |||||    
T  30666915 ttcttatgagtaccttagtactggacttaaacagtgagtga 30666875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 10922311 - 10922343
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||||||||||||||||||||||    
T  10922311 tttgaaccccggatcttgcatatattatgcatt 10922343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Original strand, 24120423 - 24120457
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatttg 434  Q
    |||||||| ||||||||||||||||||||||||||    
T  24120423 tttgaaccgcggatcttgcatatattatgcatttg 24120457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 913603 - 913635
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  913603 tttgaaccccggaccttgcatatattatgcatt 913635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 428
Target Start/End: Complemental strand, 11358292 - 11358264
Alignment:
Q  400 tttgaaccccggatcttgcatatattatg 428  Q
    |||||||||||||||||||||||||||||    
T  11358292 tttgaaccccggatcttgcatatattatg 11358264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 16663239 - 16663271
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  16663239 tttgaaccccggaccttgcatatattatgcatt 16663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 25727970 - 25728002
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  25727970 tttgaaccccggaccttgcatatattatgcatt 25728002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 34899155 - 34899123
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  34899155 tttgaaccccggaccttgcatatattatgcatt 34899123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 35126272 - 35126304
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||| ||||||||||||||||||||||    
T  35126272 tttgaaccccagatcttgcatatattatgcatt 35126304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 38130962 - 38130994
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  38130962 tttgaaccccggaccttgcatatattatgcatt 38130994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 40575612 - 40575644
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  40575612 tttgaaccccggaccttgcatatattatgcatt 40575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 41817557 - 41817525
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  41817557 tttgaaccccggaccttgcatatattatgcatt 41817525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 45432006 - 45431974
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  45432006 tttgaaccccggaccttgcatatattatgcatt 45431974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 48315027 - 48315059
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  48315027 tttgaaccccggaccttgcatatattatgcatt 48315059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 48656902 - 48656934
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  48656902 tttgaaccccggaccttgcatatattatgcatt 48656934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 48849766 - 48849798
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  48849766 tttgaaccccggaccttgcatatattatgcatt 48849798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 51882203 - 51882235
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||| |||||||||||||||||||||||    
T  51882203 tttgaaccctggatcttgcatatattatgcatt 51882235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 18533727 - 18533695
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||||||||||||||||||||||    
T  18533727 tttgaaccccggatcttgcatatattatgcatt 18533695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 12748959 - 12748927
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  12748959 tttgaaccccggaccttgcatatattatgcatt 12748927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 15020819 - 15020787
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||||||||||||||||| ||||    
T  15020819 tttgaaccccggatcttgcatatattatacatt 15020787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 23159499 - 23159467
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||| |||||||||||||||||||||    
T  23159499 tttgaaccccgaatcttgcatatattatgcatt 23159467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 32051535 - 32051567
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  32051535 tttgaaccccggaccttgcatatattatgcatt 32051567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 33105449 - 33105417
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  33105449 tttgaaccccggaccttgcatatattatgcatt 33105417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 42172246 - 42172278
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||| |||||||||||||||||||||||||    
T  42172246 tttgaactccggatcttgcatatattatgcatt 42172278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 1794654 - 1794622
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||||||||||||||||||||||    
T  1794654 tttgaaccccggatcttgcatatattatgcatt 1794622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Original strand, 26256095 - 26256124
Alignment:
Q  403 gaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||||||||||||||||||||    
T  26256095 gaaccccggatcttgcatatattatgcatt 26256124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 4302510 - 4302478
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||| |||||||||||||||||||||||||    
T  4302510 tttgaactccggatcttgcatatattatgcatt 4302478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 12268987 - 12269019
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  12268987 tttgaaccccggaccttgcatatattatgcatt 12269019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 25533031 - 25532999
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  25533031 tttgaaccccggaccttgcatatattatgcatt 25532999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 29042595 - 29042563
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||||||| |||||||||||||||    
T  29042595 tttgaaccccggatcttacatatattatgcatt 29042563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 34521193 - 34521225
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  34521193 tttgaaccccggaccttgcatatattatgcatt 34521225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 34595930 - 34595898
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  34595930 tttgaaccccggaccttgcatatattatgcatt 34595898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 46707930 - 46707898
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  46707930 tttgaaccccggaacttgcatatattatgcatt 46707898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 27848216 - 27848182
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatttg 434  Q
    ||||||||||||| |||||||||||||||||||||    
T  27848216 tttgaaccccggaccttgcatatattatgcatttg 27848182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 8091161 - 8091193
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  8091161 tttgaaccccggaccttgcatatattatgcatt 8091193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 11175843 - 11175811
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||| ||||||||||||||||||||||    
T  11175843 tttgaaccccagatcttgcatatattatgcatt 11175811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 18693665 - 18693697
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||| |||||||||||||||||||||||    
T  18693665 tttgaaccctggatcttgcatatattatgcatt 18693697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 20565078 - 20565110
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  20565078 tttgaaccccggaccttgcatatattatgcatt 20565110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 25186245 - 25186277
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  25186245 tttgaaccccggaccttgcatatattatgcatt 25186277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 29544685 - 29544653
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  29544685 tttgaaccccggaccttgcatatattatgcatt 29544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 31543070 - 31543038
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  31543070 tttgaaccccggaccttgcatatattatgcatt 31543038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 31815890 - 31815922
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  31815890 tttgaaccccggaccttgcatatattatgcatt 31815922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 36359372 - 36359340
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  36359372 tttgaaccccggaccttgcatatattatgcatt 36359340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 432
Target Start/End: Original strand, 39068715 - 39068743
Alignment:
Q  404 aaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||||||||||||||||||    
T  39068715 aaccccggatcttgcatatattatgcatt 39068743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 42791353 - 42791321
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  42791353 tttgaaccccggaccttgcatatattatgcatt 42791321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Original strand, 1285075 - 1285104
Alignment:
Q  403 gaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||||||||||||||||||||    
T  1285075 gaaccccggatcttgcatatattatgcatt 1285104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 7670492 - 7670460
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  7670492 tttgaaccccggaccttgcatatattatgcatt 7670460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 10244785 - 10244753
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  10244785 tttgaaccccggaccttgcatatattatgcatt 10244753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 14046614 - 14046646
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||| |||||||||||||||||||||    
T  14046614 tttgaaccccgtatcttgcatatattatgcatt 14046646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 14356644 - 14356676
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||| |||||||||||||||||||||    
T  14356644 tttgaaccccgtatcttgcatatattatgcatt 14356676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 18714506 - 18714474
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  18714506 tttgaaccccggaccttgcatatattatgcatt 18714474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 19599203 - 19599171
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  19599203 tttgaaccccggaccttgcatatattatgcatt 19599171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 19626528 - 19626560
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  19626528 tttgaaccccggaccttgcatatattatgcatt 19626560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 20085762 - 20085794
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  20085762 tttgaaccccggaccttgcatatattatgcatt 20085794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 27462439 - 27462471
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  27462439 tttgaaccccggaccttgcatatattatgcatt 27462471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 39280821 - 39280853
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  39280821 tttgaaccccggaccttgcatatattatgcatt 39280853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 42829237 - 42829269
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  42829237 tttgaaccccggagcttgcatatattatgcatt 42829269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 46737843 - 46737811
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  46737843 tttgaaccccggaccttgcatatattatgcatt 46737811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Complemental strand, 19854620 - 19854591
Alignment:
Q  403 gaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||||||||||||||||||||    
T  19854620 gaaccccggatcttgcatatattatgcatt 19854591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Original strand, 54294425 - 54294458
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcattt 433  Q
    ||||||||||||| ||||||||||||||||||||    
T  54294425 tttgaaccccggaccttgcatatattatgcattt 54294458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 675976 - 675944
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  675976 tttgaaccccggaccttgcatatattatgcatt 675944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 7230338 - 7230306
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  7230338 tttgaaccccggaccttgcatatattatgcatt 7230306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 8027400 - 8027432
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||| ||||||||||||||||||||||    
T  8027400 tttgaacccccgatcttgcatatattatgcatt 8027432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 11949766 - 11949798
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  11949766 tttgaaccccggaccttgcatatattatgcatt 11949798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 12322731 - 12322699
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  12322731 tttgaaccccggaacttgcatatattatgcatt 12322699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 14197434 - 14197466
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||||||| |||||||||||||||    
T  14197434 tttgaaccccggatcttacatatattatgcatt 14197466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 17423180 - 17423212
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  17423180 tttgaaccccggaccttgcatatattatgcatt 17423212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 19479480 - 19479512
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  19479480 tttgaaccccggaccttgcatatattatgcatt 19479512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 20383546 - 20383514
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  20383546 tttgaaccccggaccttgcatatattatgcatt 20383514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 20799397 - 20799429
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  20799397 tttgaaccccggaccttgcatatattatgcatt 20799429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 25783452 - 25783484
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  25783452 tttgaaccccggaccttgcatatattatgcatt 25783484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 36490626 - 36490594
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||||||||||||||||| ||||||||||    
T  36490626 tttgaaccccggatcttgcatacattatgcatt 36490594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 44815999 - 44815967
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  44815999 tttgaaccccggaccttgcatatattatgcatt 44815967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 49041984 - 49042016
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  49041984 tttgaaccccggaccttgcatatattatgcatt 49042016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 49953406 - 49953438
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  49953406 tttgaaccccggaccttgcatatattatgcatt 49953438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Original strand, 1168 - 1200
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  1168 tttgaaccccggaccttgcatatattatgcatt 1200  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 185321 - 185289
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||||||||||||| |||||||||    
T  185321 tttgaaccccggatcttgcatattttatgcatt 185289  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 8569767 - 8569735
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  8569767 tttgaaccccggaccttgcatatattatgcatt 8569735  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 8809364 - 8809332
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    |||||||| ||||||||||||||||||||||||    
T  8809364 tttgaacctcggatcttgcatatattatgcatt 8809332  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 12215811 - 12215779
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  12215811 tttgaaccccggaccttgcatatattatgcatt 12215779  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 33824939 - 33824907
Alignment:
Q  400 tttgaaccccggatcttgcatatattatgcatt 432  Q
    ||||||||||||| |||||||||||||||||||    
T  33824939 tttgaaccccggaccttgcatatattatgcatt 33824907  T

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