View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14140_low_2 (Length: 399)

Name: NF14140_low_2
Description: NF14140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14140_low_2
NF14140_low_2
[»] chr2 (2 HSPs)
chr2 (53-333)||(22349178-22349458)
chr2 (55-333)||(43022197-43022475)
[»] chr7 (3 HSPs)
chr7 (94-333)||(42882104-42882344)
chr7 (53-333)||(47158689-47158971)
chr7 (86-154)||(28317390-28317458)
[»] chr4 (5 HSPs)
chr4 (53-333)||(3529536-3529816)
chr4 (52-333)||(8995269-8995550)
chr4 (52-333)||(40721520-40721803)
chr4 (55-333)||(34198534-34198814)
chr4 (63-328)||(34462833-34463094)
[»] chr5 (1 HSPs)
chr5 (55-333)||(19241823-19242101)
[»] chr1 (3 HSPs)
chr1 (55-333)||(48384456-48384734)
chr1 (222-333)||(31159937-31160050)
chr1 (86-154)||(31160120-31160187)
[»] chr3 (6 HSPs)
chr3 (57-333)||(6044612-6044888)
chr3 (53-205)||(10381033-10381186)
chr3 (86-179)||(42564616-42564709)
chr3 (272-333)||(32119932-32119993)
chr3 (272-333)||(44084822-44084883)
chr3 (301-333)||(10424186-10424218)
[»] chr6 (1 HSPs)
chr6 (128-179)||(10886901-10886952)
[»] chr8 (1 HSPs)
chr8 (22-51)||(31866603-31866632)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 53 - 333
Target Start/End: Original strand, 22349178 - 22349458
Alignment:
Q  53 taagactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggga 152  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  22349178 taagactagctacaatggggtgttgaatatgagattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggaggga 22349277  T
Q  153 agagatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggaga 252  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  22349278 agtgatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcgcttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggaga 22349377  T
Q  253 gagtgggcgacgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22349378 gagtgggcgacgcccacgcggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 22349458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 55 - 333
Target Start/End: Complemental strand, 43022475 - 43022197
Alignment:
Q  55 agactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 154  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  43022475 agactagctacaatggggtgttgaatatgggattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaag 43022376  T
Q  155 agatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagaga 254  Q
     ||||||||||||||||| ||||||| |||||||||||||||||||||||||    |||||   ||||||||||||||||||||||||||||  | ||||    
T  43022375 tgatgaaagagttcaactagttgaatcctgccacgggggacagctgtcgcgcgcggatttgccatgccaggcgcgtgcgctacacgcgcggacagggaga 43022276  T
Q  255 gtgggcgacgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43022275 gtgggcgacgcacacgcggagagagaagagaggaaatggataaagcaagacacatgacattatgtgattggctgcttgg 43022197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 94 - 333
Target Start/End: Complemental strand, 42882344 - 42882104
Alignment:
Q  94 tgttgaagccatgcaatgaggggtgttgaaagaaggaaaaa-tctgagttggaggagggaagagatgaaagagttcaacttgttgaatgctgccacgggg 192  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42882344 tgttgaagccatgcaatgaggggtgttgaaagaaggaaaaaatctgagttggaggagggaagtgatgaaagagttcaacttgttgaatgctgccacgggg 42882245  T
Q  193 gacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagagagtgggcgacgcacacgtggagagagaagagaggaaatg 292  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  42882244 gacagctgtcgcgcgcttatttgttgtgccaggcgcgtgcgctacacgcgcagaaggagagagtgggcgacacacacgcggagagagaagagaggaaatg 42882145  T
Q  293 gataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  42882144 gataaagcaagacacatgacattatgtgattggctgcttgg 42882104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 53 - 333
Target Start/End: Original strand, 47158689 - 47158971
Alignment:
Q  53 taagactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggga 152  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47158689 taagactagttgcaatggggtgttgaatttgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaatgaaaaatctgagttggaggaggga 47158788  T
Q  153 agagatgaaagagttcaacttgttgaatg-ctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggag 251  Q
    || |||||| |||||||||| |||||||| |||||   || | ||||||||||||    ||| |      ||||||||||| |||||||||| ||  | |    
T  47158789 agtgatgaatgagttcaactagttgaatgcctgcccacggagccagctgtcgcgcgcggattggccaaagcaggcgcgtgcactacacgcgccgacaggg 47158888  T
Q  252 agagtgggcgacg-cacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
     | |||| ||| | || ||| |||||||||||||||||||||||||||| | || || |||||||| ||||||||||||||||    
T  47158889 cgcgtggccgaagtcagacgcggagagagaagagaggaaatggataaaggaggatacgtggcattaagtgattggctgcttgg 47158971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 28317390 - 28317458
Alignment:
Q  86 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28317390 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 28317458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 53 - 333
Target Start/End: Original strand, 3529536 - 3529816
Alignment:
Q  53 taagactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggga 152  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  3529536 taagactagctacaatggggtgttgaatatgggattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggaggga 3529635  T
Q  153 agagatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggaga 252  Q
    || ||||||||||||||||| ||||||| |||||||||||||||||||| ||||    |||||   ||||||||||||||||||||||||||||  | ||    
T  3529636 agtgatgaaagagttcaactagttgaatcctgccacgggggacagctgttgcgcgcggatttgccatgccaggcgcgtgcgctacacgcgcggacaggga 3529735  T
Q  253 gagtgggcgacgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3529736 gagtgggcgacgcacacgcggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 3529816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 52 - 333
Target Start/End: Complemental strand, 8995550 - 8995269
Alignment:
Q  52 ctaagactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggg 151  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  8995550 ctaagactagctacaatggggtgttgaatatgggattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggaggg 8995451  T
Q  152 aagagatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggag 251  Q
    ||| ||||||||||||||||  ||||||| ||||||||| |||||||||||||||    |||||   |||||||||||||||||||||| |||||  | |    
T  8995450 aagtgatgaaagagttcaacaagttgaatcctgccacggaggacagctgtcgcgcgcggatttgccatgccaggcgcgtgcgctacacgtgcggacaggg 8995351  T
Q  252 agagtgggcgacgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8995350 agagtgggcgacgcacacgcggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 8995269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 52 - 333
Target Start/End: Complemental strand, 40721803 - 40721520
Alignment:
Q  52 ctaagactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggg 151  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40721803 ctaagactagctacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggg 40721704  T
Q  152 aagagatgaaagagttcaacttgttgaatg-ctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaagga 250  Q
    ||| | |||| || ||||||| |||||||| ||||||| |||||||||||||||||    ||| |    |||||||||||||||||||||||||||  |     
T  40721703 aagtgttgaatgaattcaactagttgaatgcctgccacaggggacagctgtcgcgcgcggattcgccaagccaggcgcgtgcgctacacgcgcggacagg 40721604  T
Q  251 gagagtgggcg-acgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||| || || |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40721603 gagagtggccgaactcacacgcggagagagaagagaggaaatggataaaggaagacacatggcattatgtgattggctgcttgg 40721520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 34198534 - 34198814
Alignment:
Q  55 agactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 154  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34198534 agactagctacaatggggtgttgaatatgggattcaacatgttgaagccttgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 34198633  T
Q  155 agatgaaagagttcaacttgttgaatg-ctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagag 253  Q
     | |||| || ||||||| |||||||| |||||| ||||||||||||||||||    ||| |    |||||||||||||||||||||||||||  | |||    
T  34198634 tgttgaatgaattcaactagttgaatgcctgccatgggggacagctgtcgcgcgcggattcgccaagccaggcgcgtgcgctacacgcgcggacagggag 34198733  T
Q  254 agtgggcg-acgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    ||||| || || |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  34198734 agtggccgaactcacacgcggagagagaagagaggaaatggataaaggaagacagatgtcattatgtgattggctgcttgg 34198814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 63 - 328
Target Start/End: Original strand, 34462833 - 34463094
Alignment:
Q  63 tacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagagatgaaa 162  Q
    ||||||||| ||||||||  |  |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| | ||||     
T  34462833 tacaatgggctgttgaatgagcaattcaacatgttgaagccatgcaatgaggggtgttgaatg-tggaaaaatctgagttggaggagggaagtgttgaat 34462931  T
Q  163 gagttcaacttgttg-aatgctg--ccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagagagtggg 259  Q
    |  ||||||| |||| || | ||  |||| || |||||||| |||||    ||||| ||  |||||||||||||||||||||||      ||| || | |    
T  34462932 ggattcaactagttgaaagggtggcccac-ggagacagctggcgcgcgcagatttgctgaaccaggcgcgtgcgctacacgcgc------agacagggag 34463024  T
Q  260 cgacgcacacgtggagagagaagagaggaaatggataaa-gcaagacacatggcattatgtgattggctg 328  Q
    ||   |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  34463025 cgtgtcacacgcggagagagaagagaggaaatggataaaggaaagacacatggcattatgtgattggctg 34463094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 55 - 333
Target Start/End: Complemental strand, 19242101 - 19241823
Alignment:
Q  55 agactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19242101 agactagctacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaagaaaaaatctgagttggaggagggaag 19242002  T
Q  155 agatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagaga 254  Q
     ||||||||||||||||| ||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| || ||||    
T  19242001 tgatgaaagagttcaactagttgaatcctgccacgggggacagctgtcgcgcgcggatttgttgtgccaggcgcgtgcgctacacgcgcggatgg-gaga 19241903  T
Q  255 gtgggcg-acgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    ||||  | || |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19241902 gtggctgaactcacacgcggagagagaagagaggaaatggataaaggaagacacatggcattatgtgattggctgcttgg 19241823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 48384456 - 48384734
Alignment:
Q  55 agactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 154  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  48384456 agactagctacaatggggtgttgaatatgagattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaag 48384555  T
Q  155 agatgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagaga 254  Q
     ||||||||||||||||  ||||||| ||||||||| |||||| || |||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  48384556 tgatgaaagagttcaacaagttgaatcctgccacggaggacaggtggcgcgcgcggatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagaga 48384655  T
Q  255 gtgggcgacgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    ||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384656 gtgggcgacggcgacgcggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 48384734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 31160050 - 31159937
Alignment:
Q  222 caggcgcgtgcgctacacgcgcggaaggagagagtgggcgacg-cacacgtggagagagaagagaggaaatggataaagc-aagacacatggcattatgt 319  Q
    |||||||||||||||||||||||||  | ||||||||  |||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  31160050 caggcgcgtgcgctacacgcgcggaccgggagagtggcagacgtcacacgcggagagagaagagaggaaatggataaagggaagacacatggcattatgt 31159951  T
Q  320 gattggctgcttgg 333  Q
    ||||||||||||||    
T  31159950 gattggctgcttgg 31159937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 31160187 - 31160120
Alignment:
Q  86 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaag 154  Q
    ||||||||||||||||||||||||||| ||||||||||      |||||||||||||||||||||||||    
T  31160187 attcaacatgttgaagccatgcaatga-gggtgttgaatctgcaaaaaatctgagttggaggagggaag 31160120  T

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Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 57 - 333
Target Start/End: Original strand, 6044612 - 6044888
Alignment:
Q  57 actagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagag 156  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| |    
T  6044612 actagctacaatggggtgttgaatatgagattcaacatgttgaagccttgcaatggagggtgttgaaagaaggaaaaatctgagttggaggagggaagtg 6044711  T
Q  157 atgaaagagttcaacttgttgaatgctgccacgggggacagctgtcgcgcttttatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagagagt 256  Q
    |||||||||||||||  ||||||| ||||||||| |||||| || |||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6044712 atgaaagagttcaacaagttgaatcctgccacggaggacaggtggcgcgcgcggatttgttgtgccaggcgcgtgcgctacacgcgcggaaggagagagt 6044811  T
Q  257 gggcgacgcacacgtggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    ||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6044812 gggcgacggcgacgcggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 6044888  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 10381033 - 10381186
Alignment:
Q  53 taagactagttacaatggggtgttgaatatgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggga 152  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10381033 taagactagctacaatggggtgttgaatttgggattcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggaggga 10381132  T
Q  153 agagatgaaagagttcaacttgttgaatg-ctgccacgggggacagctgtcgcg 205  Q
    || ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10381133 agtgatgaaagagttcaactagttgaatgcctgccacgggggacagctgtcgcg 10381186  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 42564709 - 42564616
Alignment:
Q  86 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagagatgaaagagttcaacttgttgaa 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |  ||||||| ||||||    
T  42564709 attcaacatgttgaagccatgcaatgaggggtgttgaaagaaggaaaaatctgagttggaggagggaagtgttgaatggattcaactagttgaa 42564616  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 32119932 - 32119993
Alignment:
Q  272 ggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  32119932 ggagagagaagagaggaaatggataaaggaagacacatggcattatatgattggctgcttgg 32119993  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 44084883 - 44084822
Alignment:
Q  272 ggagagagaagagaggaaatggataaagcaagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  44084883 ggagagagaagagaggaaatggataaaggaagacacatggcattatatgattggctgcttgg 44084822  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 10424186 - 10424218
Alignment:
Q  301 aagacacatggcattatgtgattggctgcttgg 333  Q
    |||||||||||||||||||||||||||||||||    
T  10424186 aagacacatggcattatgtgattggctgcttgg 10424218  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 10886952 - 10886901
Alignment:
Q  128 ggaaaaatctgagttggaggagggaagagatgaaagagttcaacttgttgaa 179  Q
    ||||||||||||||||||||||||||| | |||| || ||||||| ||||||    
T  10886952 ggaaaaatctgagttggaggagggaagtgttgaatgaattcaactagttgaa 10886901  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 31866603 - 31866632
Alignment:
Q  22 atttattttttaactcatttttatctgact 51  Q
    ||||||||||||||||||||||||||||||    
T  31866603 atttattttttaactcatttttatctgact 31866632  T

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