View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14140_low_3 (Length: 359)
Name: NF14140_low_3
Description: NF14140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14140_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 35340232 - 35340567
Alignment:
| Q |
13 |
gagatgaagcagccgcaagccttttatattaactaactcgatcggtatctctcctgtaagaagattctctgaaaaatcaatctcaattgcaacagaaagg |
112 |
Q |
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| T |
35340232 |
gagatgaagcagccgcaagccttttatattaaccaactcgatcggtatctctcctgtaagaagattctctgaaaaatcaatttcaattgcaacagaaagg |
35340331 |
T |
|
| Q |
113 |
tttccaatctcccttggaatatttcctgtcaactcattcctgtaaagg-tatagcttctttaggacttcaaggtttccaagctcctttggaattgatccc |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35340332 |
tttccaatctcccttggaatattacctgtcaactcattcctgtaaagggtatagtttctttaggacatcaaggtttccaagctcctttggaattgatccc |
35340431 |
T |
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| Q |
212 |
acaagcttgttctgataaagagcaagaatctccaaatttgtacagtttccaagctctttaggtataccaccatgaagattattttccctaaggaccaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35340432 |
acaagcttgttctgataaagagcaagaatctccaaatttgtacagtttccaagctctttaggtataccaccatgaagattattttccctaaggaccaaac |
35340531 |
T |
|
| Q |
312 |
attgcaagttcttgagtaacccaagttcttttggta |
347 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35340532 |
attgcaagttcttgagtaacccaagttcttttggta |
35340567 |
T |
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