View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14140_low_4 (Length: 303)

Name: NF14140_low_4
Description: NF14140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14140_low_4
NF14140_low_4
[»] chr4 (18 HSPs)
chr4 (14-284)||(10396164-10396428)
chr4 (14-284)||(11196965-11197238)
chr4 (90-284)||(34946257-34946447)
chr4 (14-148)||(11197259-11197393)
chr4 (97-282)||(12717977-12718160)
chr4 (14-101)||(10396449-10396536)
chr4 (32-136)||(922469-922573)
chr4 (118-237)||(11307480-11307599)
chr4 (162-284)||(47680801-47680925)
chr4 (204-284)||(2917286-2917366)
chr4 (162-284)||(47681045-47681171)
chr4 (99-153)||(2917163-2917217)
chr4 (13-123)||(34946127-34946237)
chr4 (50-100)||(54936265-54936315)
chr4 (50-99)||(18932787-18932836)
chr4 (50-99)||(50630793-50630842)
chr4 (118-237)||(11307191-11307310)
chr4 (51-99)||(25483406-25483454)
[»] chr7 (8 HSPs)
chr7 (14-239)||(23568902-23569127)
chr7 (15-284)||(21416287-21416555)
chr7 (86-284)||(27597798-27597997)
chr7 (29-145)||(21416135-21416251)
chr7 (15-76)||(27598019-27598080)
chr7 (50-191)||(36675653-36675793)
chr7 (209-281)||(11776213-11776285)
chr7 (52-100)||(30244341-30244389)
[»] chr5 (18 HSPs)
chr5 (32-284)||(13112299-13112549)
chr5 (61-284)||(13112782-13113004)
chr5 (32-284)||(13042305-13042551)
chr5 (60-284)||(36389140-36389359)
chr5 (61-284)||(13042784-13043008)
chr5 (32-118)||(13042590-13042676)
chr5 (29-147)||(13043044-13043162)
chr5 (29-147)||(13113040-13113158)
chr5 (32-118)||(13112588-13112674)
chr5 (212-279)||(14168873-14168941)
chr5 (42-144)||(36388971-36389073)
chr5 (50-99)||(40296355-40296404)
chr5 (209-284)||(41341392-41341468)
chr5 (50-100)||(624265-624315)
chr5 (50-100)||(26074681-26074731)
chr5 (50-99)||(3295055-3295104)
chr5 (232-284)||(13042672-13042724)
chr5 (232-284)||(13112670-13112722)
[»] chr8 (8 HSPs)
chr8 (21-235)||(3671046-3671259)
chr8 (20-284)||(5981588-5981852)
chr8 (29-146)||(18829835-18829952)
chr8 (14-120)||(3670818-3670924)
chr8 (180-284)||(2954371-2954475)
chr8 (181-281)||(23753048-23753147)
chr8 (36-140)||(23752931-23753035)
chr8 (48-99)||(30441152-30441203)
[»] chr6 (6 HSPs)
chr6 (14-284)||(11637867-11638138)
chr6 (140-284)||(7301446-7301590)
chr6 (14-269)||(15092092-15092347)
chr6 (31-93)||(22605301-22605363)
chr6 (50-99)||(3415527-3415576)
chr6 (51-99)||(3058296-3058344)
[»] chr2 (14 HSPs)
chr2 (14-189)||(13792446-13792619)
chr2 (14-123)||(28226370-28226479)
chr2 (138-281)||(28226524-28226664)
chr2 (24-129)||(28226698-28226802)
chr2 (71-147)||(22062786-22062862)
chr2 (209-283)||(11727793-11727867)
chr2 (155-204)||(13792239-13792289)
chr2 (14-55)||(19548177-19548218)
chr2 (20-76)||(30219944-30220000)
chr2 (14-153)||(35448603-35448740)
chr2 (95-281)||(35414293-35414476)
chr2 (50-99)||(36178645-36178694)
chr2 (50-102)||(28254274-28254326)
chr2 (209-284)||(44981908-44981984)
[»] chr3 (14 HSPs)
chr3 (163-284)||(16143327-16143450)
chr3 (14-122)||(53595993-53596101)
chr3 (14-122)||(53596308-53596416)
chr3 (22-148)||(48127806-48127932)
chr3 (162-284)||(40195966-40196090)
chr3 (45-131)||(53596539-53596625)
chr3 (14-153)||(16143471-16143607)
chr3 (178-284)||(32200944-32201051)
chr3 (155-279)||(32201204-32201330)
chr3 (211-284)||(54017694-54017768)
chr3 (209-284)||(43978721-43978796)
chr3 (209-284)||(16869658-16869735)
chr3 (31-97)||(54017590-54017656)
chr3 (97-153)||(43978559-43978615)
[»] chr1 (7 HSPs)
chr1 (91-284)||(31973481-31973674)
chr1 (118-272)||(47159140-47159294)
chr1 (155-284)||(34665955-34666085)
chr1 (117-284)||(43834341-43834507)
chr1 (15-62)||(26231554-26231601)
chr1 (50-100)||(17294646-17294696)
chr1 (50-99)||(32168738-32168787)
[»] scaffold0391 (1 HSPs)
scaffold0391 (50-101)||(1729-1780)
[»] scaffold0548 (1 HSPs)
scaffold0548 (118-237)||(3969-4088)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 10396164 - 10396428
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| |||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||| ||    
T  10396164 gaaatggaggaaatgttgaatatataagagagaagacccataaacccattgccttagggttttaggtaagagggtggtgtctctctcttagcgggtcata 10396263  T
Q  114 gatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcct 213  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||  ||||||||||||      |||||    
T  10396264 gacgtttagctcgttgccgctcccagcgctccccatactctcccaacaaactggcattagagcctagttaggctttctgggggagtggg------atcct 10396357  T
Q  214 agtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  10396358 agtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgttggaaatcaagtgtgagtg 10396428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 11196965 - 11197238
Alignment:
Q  14 gaaattgaggaaatgttggatatata----agagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggt 109  Q
    ||||| ||||||| ||||||||||||    ||||||||| ||| ||||||||||||||| || |||| |||||||  | ||||||||||||||||  |||    
T  11196965 gaaatggaggaaacgttggatatatataagagagaggagacccttaaacccattgccttaggattttaggtaagagtgaggtgtctctctcttagctggt 11197064  T
Q  110 cctagatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaa 209  Q
    ||||| |||||||| |||||||||||| | ||||||||| |||| || ||||||||||||||||||| |||||||||||| ||||||||||||||  | |    
T  11197065 cctaggtgtttagcccattgccgctccaaacgctccccagactc-ccaaacaaactggtatcagagcctagttaggcttgctgggggagtgggagcggga 11197163  T
Q  210 tcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||| ||||||||||||||||||||||||| |||| | ||||||  ||||||| |||  ||| ||||||||||||    
T  11197164 tcctggtgtggatcatcctagtgatgtgggtgagtaacacttgattgggagattgttaaaaaccaagtgtgagtg 11197238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 90 - 284
Target Start/End: Complemental strand, 34946447 - 34946257
Alignment:
Q  90 gtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttg 189  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||| |||||| |  | |||| ||||||||   ||||||||||| | |||||| |||    
T  34946447 gtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactc-cccaacaa---ggtatcagagcctggttaggtttg 34946352  T
Q  190 ttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
     ||||||||||||| | | ||| |||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  34946351 ctgggggagtgggactgggatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttggaaatcaagtgtgagtg 34946257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 11197259 - 11197393
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||  |||||||    
T  11197259 gaaatggaggaaacgttggatatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtggtgtctctctcttagctggtccta 11197358  T
Q  114 gatgtttagctcattgccgctcccagcgctcccca 148  Q
    | |||||||| |||||||||||| | |||||||||    
T  11197359 ggtgtttagcccattgccgctccaaacgctcccca 11197393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 12718160 - 12717977
Alignment:
Q  97 tctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctccc-aacaaactggtatcagagcatagttaggcttgttgggg 195  Q
    ||||||||| ||| ||||| ||||||||||||||||||   |||||||    || |||||| || ||| |||||| ||||| |||||||||||| |||||    
T  12718160 tctcttagttggttctagacgtttagctcattgccgctttaagcgctct---tagtctccccaataaattggtattagagcctagttaggcttgctgggg 12718064  T
Q  196 gagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgag 282  Q
    |||||||||  | |||||||| ||||||||||||||||||||||  ||||| |||||||  ||| || ||| |||||||||||||||    
T  12718063 gagtgggagcaggatcctagtatggatcatcctagtgatgtgggttagtcacacttgaggaggaaattgttagaaatcaagtgtgag 12717977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 10396449 - 10396536
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctct 101  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||  ||||| |||||||||    
T  10396449 gaaatggaggaaatgttggatatataagagaggagacccataaacccattgccttagggttttggataagagtgtggtctctctctct 10396536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 922469 - 922573
Alignment:
Q  32 gatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgcc 131  Q
    |||||| |||||||||| ||||||||||||||| ||| ||| ||| | |||||  ||||||||||||| |||| || ||||||| |||||  ||||||||    
T  922469 gatatagaagagaggagacccataaacccattgtcttaggggtttggataagagtgtggtgtctctcttttagcggatcctagacgtttaagtcattgcc 922568  T
Q  132 gctcc 136  Q
    |||||    
T  922569 gctcc 922573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 11307599 - 11307480
Alignment:
Q  118 tttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctagt 216  Q
    ||||||| |||| ||||||||| |||||||| |||| |||||||||||||||||| |||  | |||||||||| |||||| | |||||| |  |||||||    
T  11307599 tttagcttattgtcgctcccagtgctccccagactc-cccaacaaactggtatcatagctctggttaggcttgatgggggtgcgggagtgggttcctagt 11307501  T
Q  217 gtggatcatcctagtgatgtg 237  Q
    ||||||||  |||||||||||    
T  11307500 gtggatcaggctagtgatgtg 11307480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 47680801 - 47680925
Alignment:
Q  162 aactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggag 260  Q
    |||||||||||||||  | ||||||||   |||||||| |||||| | ||||||||| ||||||  ||||||||||||| || ||| ||||||| |||||    
T  47680801 aactggtatcagagccctggttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacacttgagggggag 47680900  T
Q  261 atcgtt-ggaaatcaagtgtgagtg 284  Q
    || ||| ||||||||||||||||||    
T  47680901 attgttgggaaatcaagtgtgagtg 47680925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 2917366 - 2917286
Alignment:
Q  204 gtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||| |||| ||||||||| | |||||||||||||| |||||| ||||||| || |||| ||||||||||||  |||||||    
T  2917366 gtcggatccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttggaaatcaatcgtgagtg 2917286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 47681045 - 47681171
Alignment:
Q  162 aactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagt--catacttgagaggg 258  Q
    ||||| |||||||||  ||||||||||   |||||||| |||||| | ||||||||| ||||||  ||||||||||||| || |  || ||||||| |||    
T  47681045 aactgatatcagagccctagttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactaacacacttgaggggg 47681144  T
Q  259 agatcgtt-ggaaatcaagtgtgagtg 284  Q
    |||| ||| |||||| |||||||||||    
T  47681145 agattgttgggaaataaagtgtgagtg 47681171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 2917217 - 2917163
Alignment:
Q  99 tcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactc 153  Q
    |||||||| |||||||| ||||| | |||||||||||||| ||||||||| ||||    
T  2917217 tcttagtgagtcctagacgtttaacccattgccgctcccaacgctccccagactc 2917163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 34946237 - 34946127
Alignment:
Q  13 tgaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcct 112  Q
    |||||| ||| ||| |||| |||| |||| |||||| | | ||||||   |||||| || |||| |||||||  ||||||||||||||||||  ||||||    
T  34946237 tgaaatggagcaaacgttgaatatttaagggaggagactcgtaaacctcatgccttaggattttgggtaagagtgtggtgtctctctcttagaaggtcct 34946138  T
Q  113 agatgtttagc 123  Q
    ||| |||||||    
T  34946137 agacgtttagc 34946127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 54936265 - 54936315
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctc 100  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||||||||    
T  54936265 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctc 54936315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18932836 - 18932787
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  18932836 cccataaacccattgccttaaggttttaggtaagagtgtggtgtctctct 18932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 50630842 - 50630793
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  50630842 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 50630793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 11307310 - 11307191
Alignment:
Q  118 tttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctagt 216  Q
    ||||||| |||| ||||||||| |||||| | |||| ||||||| |||||||||| |||  | ||| |||||| |||||| | |||||| |  |||||||    
T  11307310 tttagcttattgtcgctcccagtgctccctagactc-cccaacatactggtatcatagccctggttgggcttgatgggggtgcgggagtgggttcctagt 11307212  T
Q  217 gtggatcatcctagtgatgtg 237  Q
    ||||||||   ||||||||||    
T  11307211 gtggatcaagatagtgatgtg 11307191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 25483406 - 25483454
Alignment:
Q  51 ccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    ||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  25483406 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 25483454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 23569127 - 23568902
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||| |||||||  ||| ||||||||  |||||||||||||    
T  23569127 gaaatagaggaaaagttggatatataaaagaggaggcccataaacccattgccttaaggttttgggtaagagtgtgatgtctctcatttagtgggtccta 23569028  T
Q  114 gatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggc-ttgttgggggagtgggagtcgaatcc 212  Q
    || |||||||||||||||||| |||  |||||||| |||| |||||||||||||||||| ||| | ||||||| ||| ||||||||||||||  | ||||    
T  23569027 gacgtttagctcattgccgctaccaatgctccccagactc-cccaacaaactggtatcatagcctggttaggctttgctgggggagtgggagcaggatcc 23568929  T
Q  213 tagtgtggatcatcctagtgatgtggg 239  Q
    |||||||||||||||||||||||||||    
T  23568928 tagtgtggatcatcctagtgatgtggg 23568902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 21416555 - 21416287
Alignment:
Q  15 aaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctag 114  Q
    |||| ||| ||| ||||| |||||||||| |||| ||||||||| | ||| ||| ||||||| |||||||  |||||||||||||||||| |||||||||    
T  21416555 aaatggagcaaaagttggttatataagagcggagacccataaactcgttgtctttgggttttgggtaagaatgtggtgtctctctcttagcgggtcctag 21416456  T
Q  115 atgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatccta 214  Q
    ||||| | | ||||| |||||| |||||| |||| |||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||  | ||||||    
T  21416455 atgttcaacccattgtcgctccaagcgcttcccagactc-cccaacaaattggtatcagagcctagttaggcttgctgggggagtgggagcgggatccta 21416357  T
Q  215 gtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    ||||||||||||||||||||||||| |||||| |||| || |||| ||  || | |||||||||||||||    
T  21416356 gtgtggatcatcctagtgatgtgggtgagtcacacttcagggggaaatttttaggaatcaagtgtgagtg 21416287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 27597798 - 27597997
Alignment:
Q  86 ggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttagg 185  Q
    |||| |||||||||| | ||||||||||||| |||| | ||||| |||||| ||||||||||| |||| ||||| |||||||||||||||| |  |||||    
T  27597798 ggtgatgtctctctcattgtgggtcctagatatttaacccattgtcgctccaagcgctccccagactc-cccaataaactggtatcagagcctgattagg 27597896  T
Q  186 cttgttgggggagtggga--gtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagt 283  Q
    |||| |||||||||||||  |  | | ||||||||||||||||||||||||||||| |||||| ||||||  | ||||||||||||||||||||||||||    
T  27597897 cttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgtgggtgagtcacacttgaaggagagatcgttggaaatcaagtgtgagt 27597996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 21416251 - 21416135
Alignment:
Q  29 ttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcatt 128  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||  |||||||||||||||||| |||||||||||||||||  ||||    
T  21416251 ttggatatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtggtgtctctctcttagcgggtcctagatgtttagtccatt 21416152  T
Q  129 gccgctcccagcgctcc 145  Q
    |||||||| || |||||    
T  21416151 gccgctccaagtgctcc 21416135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 27598019 - 27598080
Alignment:
Q  15 aaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggtttt 76  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  27598019 aaattgagcaaacgttggatatataagagaggagacccataaacccattgtcttagggtttt 27598080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 36675653 - 36675793
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccat 149  Q
    |||||||| ||| |||||| || |||| | ||| |  |||||||||||||||||   ||||||||| ||||  | |||||  ||| | ||||||||||||    
T  36675653 cccataaatccactgccttaggattttggataatagtgtggtgtctctctcttaacaggtcctagacgtttcacccattgatgcttcaagcgctccccat 36675752  T
Q  150 actctcccaacaaactggtatcagagcatagttaggcttgtt 191  Q
    |||| ||||| ||||| |||||||||| ||||||||||||||    
T  36675753 actc-cccaagaaactagtatcagagcctagttaggcttgtt 36675793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 11776285 - 11776213
Alignment:
Q  209 atcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtga 281  Q
    ||||||| ||||||||  ||||||||||||| || ||||||||||| ||||||| ||||| | ||||||||||    
T  11776285 atcctagcgtggatcaggctagtgatgtgggtgactcatacttgagggggagattgttgggattcaagtgtga 11776213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 30244341 - 30244389
Alignment:
Q  52 cataaacccattgccttggggttttcggtaagacggtggtgtctctctc 100  Q
    |||||||||||||||||  |||||| |||||||  ||||||||||||||    
T  30244341 cataaacccattgccttaaggttttgggtaagagtgtggtgtctctctc 30244389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 13112299 - 13112549
Alignment:
Q  32 gatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgcc 131  Q
    |||||||||| |||||| |||| |||||||| | ||| | ||||| |||||||  ||| |||||||||||||| |||||||||| ||||| | ||||| |    
T  13112299 gatatataagtgaggagacccaaaaacccatcgtcttagagtttttggtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccattgtc 13112398  T
Q  132 gctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagt 231  Q
    ||||| |||||||||||  ||| |||||||||||| |||  |||  | |||||||||||||||||||||||||| ||||| || |||||  | |||||||    
T  13112399 gctccaagcgctccccaacctc-cccaacaaactgatatttgagtctggttaggcttgttgggggagtgggagtggaatcatattgtgggccttcctagt 13112497  T
Q  232 gatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||||||  |||||| ||||||||||| | | |||||||||||||||||||||    
T  13112498 gatgtggatgagtcacacttgagaggg-ggttgttggaaatcaagtgtgagtg 13112549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 13112782 - 13113004
Alignment:
Q  61 attgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctcccaac 160  Q
    ||||||||  |||||| |||||||  |||||||||||||||||| ||||||||||  |||||| ||||| |||| ||||||||||||| |||| ||||||    
T  13112782 attgccttaaggttttgggtaagaatgtggtgtctctctcttagcgggtcctagacatttagcccattgtcgcttccagcgctccccagactcccccaac 13112881  T
Q  161 aaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggag 260  Q
    |||||||||||||||| |  ||||||||| ||||| |||| |||  | |||| ||| |||||| || ||||||| || | |||||| ||||||| |||||    
T  13112882 aaactggtatcagagccttcttaggcttgctggggaagtgagagcgggatcccagt-tggatcttcttagtgatatgagtgagtcacacttgagggggag 13112980  T
Q  261 atcgttggaaatcaagtgtgagtg 284  Q
    || ||||||||||||| |||||||    
T  13112981 attgttggaaatcaagagtgagtg 13113004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 13042305 - 13042551
Alignment:
Q  32 gatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgcc 131  Q
    |||||||||| |||||| |||| |||||||| | ||| | ||||| |||||||  ||| |||||||||||||| |||||||||| ||||| | ||||| |    
T  13042305 gatatataagtgaggagacccaaaaacccatcgtcttagagtttttggtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccattgtc 13042404  T
Q  132 gctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagt 231  Q
    ||||| |||||||||||  ||| ||     ||||| | |  |||  | |||||||||||||||||||||||||| ||||| || |||||  | |||||||    
T  13042405 gctccaagcgctccccaacctcccc-----aactgatgtttgagtctggttaggcttgttgggggagtgggagtggaatcatattgtgggccttcctagt 13042499  T
Q  232 gatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||||||| |||||| ||||||||||| | | |||||||||||||||||||||    
T  13042500 gatgtgggtgagtcacacttgagaggg-ggttgttggaaatcaagtgtgagtg 13042551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 60 - 284
Target Start/End: Complemental strand, 36389359 - 36389140
Alignment:
Q  60 cattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctcccaa 159  Q
    ||||||||| ||||||| |||||    ||| ||||||||| |||||||||||| || ||||| | |||||||||||| |||||||  ||  ||| | |||    
T  36389359 cattgccttagggttttgggtaacggtgtgatgtctctcttttagtgggtcctggacgtttaac-cattgccgctccaagcgctcttcagtctc-ctcaa 36389262  T
Q  160 caaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagaggga 259  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||  |||||||||| |||||| ||||||||||||||  |||||| ||||||| ||||    
T  36389261 caaactggtatcagaacataattaggcttgctgggggagtgggagcggaatcctagt-tggatcgtcctagtgatgtgg--gagtcaaacttgaggggga 36389165  T
Q  260 gatcgttggaaatcaagtgtgagtg 284  Q
    | | ||||| ||||||||| |||||    
T  36389164 gtttgttgggaatcaagtgcgagtg 36389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 13042784 - 13043008
Alignment:
Q  61 attgccttggggttttcggtaagacggtggtgtctc--tctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctccca 158  Q
    ||||||||  |||||| |||||||  ||||||||||  |||||||| || |||||||  |||||| ||||| |||| ||| ||||||||| |||| ||||    
T  13042784 attgccttaaggttttgggtaagaatgtggtgtctctctctcttagcggatcctagacatttagcccattgtcgcttccaacgctccccagactccccca 13042883  T
Q  159 acaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagaggg 258  Q
    |||||||||||||||||| |  ||||||||| ||||| |||| | |  | |||| ||| |||||| || ||||||| || | |||||| ||||||| |||    
T  13042884 acaaactggtatcagagccttcttaggcttgctggggaagtgagtgcgggatcccagt-tggatcttcttagtgatatgagtgagtcacacttgaggggg 13042982  T
Q  259 agatcgttggaaatcaagtgtgagtg 284  Q
    |||| ||||||||||||| |||||||    
T  13042983 agattgttggaaatcaagagtgagtg 13043008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 13042590 - 13042676
Alignment:
Q  32 gatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgt 118  Q
    ||||||||||||||||| |||||||||||||||||||  |||||| | |||||  |||||||||||||||||| | |||||||||||    
T  13042590 gatatataagagaggagacccataaacccattgccttaaggttttggataagagtgtggtgtctctctcttagcgtgtcctagatgt 13042676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 13043044 - 13043162
Alignment:
Q  29 ttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcatt 128  Q
    |||||||||||||||||||| |||||||||||||   ||| || |||| |||||||   |||||||||||||||||  |||||||||  |||||| ||||    
T  13043044 ttggatatataagagaggagacccataaacccatcatcttaggattttgggtaagagattggtgtctctctcttagcaggtcctagacatttagcccatt 13043143  T
Q  129 gccgctcccagcgctcccc 147  Q
    || ||||| ||||||||||    
T  13043144 gctgctccaagcgctcccc 13043162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 13113040 - 13113158
Alignment:
Q  29 ttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcatt 128  Q
    |||||||||||||||||||| |||||||||||||   ||| || |||| |||||||   |||||||||||||||||  |||||||||  |||||| ||||    
T  13113040 ttggatatataagagaggagacccataaacccatcatcttaggattttgggtaagagattggtgtctctctcttagcaggtcctagacatttagcccatt 13113139  T
Q  129 gccgctcccagcgctcccc 147  Q
    || ||||| ||||||||||    
T  13113140 gctgctccaagcgctcccc 13113158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 13112588 - 13112674
Alignment:
Q  32 gatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgt 118  Q
    ||||||||||||||||| ||||||||||||||| |||  |||||| | |||||  ||||||||| |||||||| | |||||||||||    
T  13112588 gatatataagagaggagacccataaacccattgtcttaaggttttggataagagtgtggtgtctttctcttagcgtgtcctagatgt 13112674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 14168873 - 14168941
Alignment:
Q  212 ctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttgga-aatcaagtgt 279  Q
    |||||||||||||| ||||||||||||  || ||||||||||| ||||||| |||||| ||||||||||    
T  14168873 ctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattgttggataatcaagtgt 14168941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 36389073 - 36388971
Alignment:
Q  42 agaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcg 141  Q
    ||||||| ||||||||| || |||||| ||||||| ||| |||  ||||||| ||||||||||  |||| ||||  |||||| |||||||||||  ||||    
T  36389073 agaggagacccataaactcagtgccttagggttttgggtcagagtgtggtgtttctctcttagctggtcttagacatttagcgcattgccgctctgagcg 36388974  T
Q  142 ctc 144  Q
    |||    
T  36388973 ctc 36388971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 40296404 - 40296355
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||||    
T  40296404 cccataaacccattgccttgaggttttgggtaagagtgtggtgtctctct 40296355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 41341392 - 41341468
Alignment:
Q  209 atcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgtt-ggaaatcaagtgtgagtg 284  Q
    ||||||||||||||||  ||||||||||||| || ||| ||||||| |||||||  || || |||||||||||||||    
T  41341392 atcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgggtaatcaagtgtgagtg 41341468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 624265 - 624315
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctc 100  Q
    ||||||||||||| |||||| |||||| |||||||  ||||||||||||||    
T  624265 cccataaacccatagccttgaggttttgggtaagagtgtggtgtctctctc 624315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 26074681 - 26074731
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctc 100  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||||||||    
T  26074681 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctc 26074731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 3295104 - 3295055
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||| |||||| |||| ||  |||||||||||||    
T  3295104 cccataaacccattgccttgaggttttgggtatgagtgtggtgtctctct 3295055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 13042672 - 13042724
Alignment:
Q  232 gatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||||||| |||||| ||||||| ||| ||  |||||||||||||||||||||    
T  13042672 gatgtgggtgagtcacacttgagggggggactgttggaaatcaagtgtgagtg 13042724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 13112670 - 13112722
Alignment:
Q  232 gatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||||||| |||||| ||||||| ||| ||  |||||||||||||||||||||    
T  13112670 gatgtgggtgagtcacacttgagggggggactgttggaaatcaagtgtgagtg 13112722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 3671259 - 3671046
Alignment:
Q  21 aggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgttt 120  Q
    |||||| |||||||||||||||||||||  ||||||||| | |||||| ||||||| | ||| |   ||||||||||||||||| ||||| ||||  |||    
T  3671259 aggaaacgttggatatataagagaggagaaccataaacctactgccttagggttttggataatagtttggtgtctctctcttagcgggtcttagacattt 3671160  T
Q  121 agctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtgg 220  Q
     |||||||||||||||  ||| |||||| |||| ||||||||| |||||||||||  | | |||||||| ||||||||||||||  | ||||||||||||    
T  3671159 cgctcattgccgctccaggcgttccccagactc-cccaacaaattggtatcagagtctggctaggcttgctgggggagtgggagcgggatcctagtgtgg 3671061  T
Q  221 atcatcctagtgatg 235  Q
    ||| |||||||||||    
T  3671060 atcgtcctagtgatg 3671046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 5981852 - 5981588
Alignment:
Q  20 gaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggta-agacggtggtgtctc--tctcttagtgggtcctagat 116  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||||||  |||||| |||  ||| | ||||||||   ||||||| ||| |||| ||     
T  5981852 gaggaaacgttggatatataagagaggggacccataaacc-attgccttaaggttttgggtggagatg-tggtgtctaagtctcttactgg-tccttgaa 5981756  T
Q  117 gtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcag-agcatagttaggcttgttgggggagtgggagtcgaatcctag 215  Q
    ||||||| ||||||||||| |  ||||||||  |||| ||||| ||| ||||||||| | | | |||||||| | | ||||||||||||  | |||||||    
T  5981755 gtttagcccattgccgctctcgacgctccccggactcccccaagaaa-tggtatcagaaccctggttaggctcggt-ggggagtgggagcgggatcctag 5981658  T
Q  216 tgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcg-ttggaaatcaagtgtgagtg 284  Q
    |||||||||  ||||||||||||| || |||  |||||| ||||||| | ||||||||||||||||||||    
T  5981657 tgtggatcaggctagtgatgtgggtgactcacgcttgagggggagattgtttggaaatcaagtgtgagtg 5981588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 18829952 - 18829835
Alignment:
Q  29 ttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcatt 128  Q
    |||||||| |||||||| |  || |||||||||||||||| || |||| | |||||  ||||| ||| |||||||| |||||||||| ||||||| ||||    
T  18829952 ttggatatttaagagagtaaacctataaacccattgccttaggattttggataagagtgtggtatctttctcttagcgggtcctagacgtttagcccatt 18829853  T
Q  129 gccgctcccagcgctccc 146  Q
    |||||||| |||||||||    
T  18829852 gccgctccaagcgctccc 18829835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 3670924 - 3670818
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||| ||| | |||| ||||||| | ||| |  |||||||||||||||| | ||||| ||    
T  3670924 gaaatggaggaaacgttggatatataagagatgagacccataaatccactaccttagggttttggataataatgtggtgtctctctcttggcgggtctta 3670825  T
Q  114 gatgttt 120  Q
    || ||||    
T  3670824 gacgttt 3670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 2954475 - 2954371
Alignment:
Q  180 gttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgt 279  Q
    |||||||| | ||||||||||||||    ||||||||||||||||  ||||||||||||| || ||| ||||||| ||||||| ||||    ||||||||    
T  2954475 gttaggctcggtgggggagtgggagcaagatcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagattgttgagtttcaagtgt 2954376  T
Q  280 gagtg 284  Q
    |||||    
T  2954375 gagtg 2954371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 23753147 - 23753048
Alignment:
Q  181 ttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtg 280  Q
    ||||| ||| ||| ||||||||||  | || ||||| ||||||||| |||||||||||| || ||| ||||||| ||||||| | |||||||||||||||    
T  23753147 ttaggtttgatggaggagtgggagcgggattctagt-tggatcatcgtagtgatgtgggtgaatcacacttgagggggagattgatggaaatcaagtgtg 23753049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 23753035 - 23752931
Alignment:
Q  36 tataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctc 135  Q
    |||||||||||||  |||| |||||| ||||| | |||||| ||| |||  || | |||||||||||||||| ||| | ||||||||| |||| || |||    
T  23753035 tataagagaggagaaccattaacccaatgcctcgaggttttgggtcagagtgttgcgtctctctcttagtggatccgatatgtttagcccattaccactc 23752936  T
Q  136 ccagc 140  Q
    |||||    
T  23752935 ccagc 23752931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 30441152 - 30441203
Alignment:
Q  48 ggcccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  30441152 ggcccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 30441203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 284
Target Start/End: Complemental strand, 11638138 - 11637867
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||| |||| ||||||||||||||||| ||  |  || |||||||||||| || |||| |||||||   ||||||||||||||| | ||||||||    
T  11638138 gaaatggagaaaatattggatatataagagagaagatctgtatacccattgccttaggattttgggtaagagtatggtgtctctctctttgcgggtccta 11638039  T
Q  114 gatgtttagctcattgccgctccca-gcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttggggg-agtgggagtcgaatc 211  Q
    || ||||| | |||| ||||||||| |||||||| | |||| ||||| |||| ||||||||||| |  |||||||||||||||| |||| |||| | |||    
T  11638038 gacgtttaacccattaccgctcccaagcgctcccaagactc-cccaagaaacaggtatcagagcctgattaggcttgttggggggagtgagagtgggatc 11637940  T
Q  212 ctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    ||  |||||||||| ||||| ||||||  |||||| ||||||| || |||| |||| ||||||||||||||||    
T  11637939 cttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaaaatcaagtgtgagtg 11637867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 284
Target Start/End: Complemental strand, 7301590 - 7301446
Alignment:
Q  140 cgctccccatactctcccaacaaactggtatcagagc-atagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgg 238  Q
    ||||||||| |||| ||||||||||| |||||||||| || |||||||| | ||||||||||||||  | |||||| |||||||||  ||||||||||||    
T  7301590 cgctccccaaactc-cccaacaaactagtatcagagccatggttaggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgg 7301492  T
Q  239 gcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    | |||||| | |||||  ||| || |||| |||| |||||||||||    
T  7301491 gtgagtcacagttgaggaggatattgttgaaaattaagtgtgagtg 7301446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 15092092 - 15092347
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||||||| |||||||||||||||| |||||| |  ||||| |||   ||| ||  |||||| ||||| |  ||| |||||||||||||| |||| ||     
T  15092092 gaaattgagaaaatgttggatatatacgagaggggatccatatacctgatgctttaaggttttaggtaatagtgtgatgtctctctcttagcgggttctt 15092191  T
Q  114 gatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagag-catagtt-aggcttgttgggggagtgggagtcgaatc 211  Q
    |||||||||  || ||||||||| ||||||  ||| |||| |||||| |||||||||||||| ||| ||| ||||| | |  ||||| |||||| | |||    
T  15092192 gatgtttagtccactgccgctcctagcgctttccagactc-cccaac-aactggtatcagagccatggttaaggctcggtacgggagcgggagtgggatc 15092289  T
Q  212 ctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttgga 269  Q
    |||||||||||||  ||||| |||| || || ||| ||||||| || |||| ||||||    
T  15092290 ctagtgtggatcagactagtaatgttggtgactcacacttgaggggaagattgttgga 15092347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 22605363 - 22605301
Alignment:
Q  31 ggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgt 93  Q
    ||||||||||||| |||  |||||||||||||||||||  |||||| |||||||  |||||||    
T  22605363 ggatatataagagtggaaacccataaacccattgccttaaggttttgggtaagaatgtggtgt 22605301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 3415527 - 3415576
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  3415527 cccataaacccattgccttaaggtttttggtaagagtgtggtgtctctct 3415576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 3058296 - 3058344
Alignment:
Q  51 ccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    ||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  3058296 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 3058344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 13792619 - 13792446
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| |||||||| || ||||||||||||||||| ||| || |||||||| |||| |||||| |||||||  ||| ||||||| |  ||| ||||||||    
T  13792619 gaaatggaggaaatatttgatatataagagaggagacccgtacacccattgacttgaggttttgggtaagagtgtgatgtctcttt--tagcgggtccta 13792522  T
Q  114 gatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttg 189  Q
    |||||||||  | |||||||||||  ||||||| | |||| |||||||||||||||||||||| ||||||||||||    
T  13792521 gatgtttagtcccttgccgctccccacgctccctagactcccccaacaaactggtatcagagcctagttaggcttg 13792446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 28226370 - 28226479
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |||||||  |||||||||||||||| |  |||||||    
T  28226370 gaaatggaggaaacgttggatatataagagaggagacccataaacacattgtcttagggttttaggtaagagtgtggtgtctctctctttgcaggtccta 28226469  T
Q  114 gatgtttagc 123  Q
     |||||||||    
T  28226470 tatgtttagc 28226479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 281
Target Start/End: Original strand, 28226524 - 28226664
Alignment:
Q  138 agcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtg 237  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||||| |||| |||| |||||||||  | |||||||| || |||| ||||||||||      
T  28226524 agcgctccccaaactc-cccaacaaactggtatcagagcctagttagacttgctgggagagtgggagcgggatcctagt-tgaatcaacctagtgatg-a 28226620  T
Q  238 ggcgagtcatacttgagagggagatcgttggaaatcaagtgtga 281  Q
    || ||||||  |||||| ||||||| ||||||||||||||||||    
T  28226621 ggtgagtcacgcttgagggggagattgttggaaatcaagtgtga 28226664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 28226698 - 28226802
Alignment:
Q  24 aaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagc 123  Q
    |||| |||||||||||||||||||| | ||||||||||||| |||  |||||| |||||||  ||||||||||||||||   || ||||||| |||||||    
T  28226698 aaatattggatatataagagaggagactcataaacccattgtctt-aggtttttggtaagagtgtggtgtctctctctttacggatcctagacgtttagc 28226796  T
Q  124 tcattg 129  Q
     |||||    
T  28226797 acattg 28226802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 22062862 - 22062786
Alignment:
Q  71 ggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctcccc 147  Q
    |||||| |||||||  ||||||| |||||||||  |||||||| |||||||||||||||||||||| || |||||||    
T  22062862 ggttttgggtaagagtgtggtgtttctctcttaacgggtcctaaatgtttagctcattgccgctccaagtgctcccc 22062786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 11727867 - 11727793
Alignment:
Q  209 atcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagt 283  Q
    ||||||||||||||||  ||||||||||||| || ||| ||| |||||||||||  ||| |||| ||||||||||    
T  11727867 atcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattattgaaaattaagtgtgagt 11727793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 13792289 - 13792239
Alignment:
Q  155 cccaacaaactggtatcagagcatagttaggcttg-ttgggggagtgggag 204  Q
    |||||||||||||||||||||| |||||||||||| | |||||||||||||    
T  13792289 cccaacaaactggtatcagagcctagttaggcttgctggggggagtgggag 13792239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 19548177 - 19548218
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccata 55  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  19548177 gaaatagaggaaatgttggatatataagagaggagacccata 19548218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 30220000 - 30219944
Alignment:
Q  20 gaggaaatgttggatatataagagaggaggcccataaacccattgccttggggtttt 76  Q
    ||||||||||||||||  ||||||||||| |||||||||| |||| ||| |||||||    
T  30220000 gaggaaatgttggatacttaagagaggagacccataaaccaattgtcttagggtttt 30219944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 35448740 - 35448603
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||||||| ||| ||||||||||||||||| || |||||   |||||||| | ||||| | |||||  | |||||||  |||||||||| || ||    
T  35448740 gaaatagaggaaacgtttgatatataagagaggagacctataaattaattgccttagagtttttgttaagagtgcggtgtct--ctcttagtggatctta 35448643  T
Q  114 gatgtttagctcattgccgctcccagcgctccccatactc 153  Q
    || ||||||   ||||||||||| ||||||| ||| ||||    
T  35448642 gacgtttagtctattgccgctccaagcgctctccagactc 35448603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 281
Target Start/End: Complemental strand, 35414476 - 35414293
Alignment:
Q  95 tctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatagttaggcttgttggg 194  Q
    ||||||||| |||||||||||  ||||||||||||| ||| | |||| |||||| |||| ||||| ||  |||||||||||  | |||||||||| |  |    
T  35414476 tctctcttaatgggtcctagacatttagctcattgctgcttcaagcgttccccagactc-cccaataatttggtatcagagtcttgttaggcttgctaag 35414378  T
Q  195 ggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtga 281  Q
    |||||| ||   | ||||||||||||| | || ||||| | |||  |||||| |||| |||  || || |||||||||||| |||||    
T  35414377 ggagtgtgaacgggatcctagtgtggaccgtcttagtggtttggatgagtcacacttcaga--gaaattgttggaaatcaaatgtga 35414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 36178694 - 36178645
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  36178694 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 36178645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 28254326 - 28254274
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctctt 102  Q
    ||||||||| |||||||||  |||||| |||||||  ||||||||||||||||    
T  28254326 cccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctctt 28254274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 44981984 - 44981908
Alignment:
Q  209 atcctagtgtggatcatc-ctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    ||||||||||||||||   ||||||||||||| || ||| ||||||| |||| || | ||||| |||||||||||||    
T  44981984 atcctagtgtggatcaaggctagtgatgtgggtgactcacacttgagggggaaattgctggaattcaagtgtgagtg 44981908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 16143327 - 16143450
Alignment:
Q  163 actggtatcagagcatagttaggcttgttgg--gggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggag 260  Q
    |||||||||||||| | |||||||||| |||  |||||||||||  | || |||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  16143327 actggtatcagagcctggttaggcttgctggacgggagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggag 16143426  T
Q  261 atcgttggaaatcaagtgtgagtg 284  Q
    || |||||||||||||||||||||    
T  16143427 attgttggaaatcaagtgtgagtg 16143450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 53595993 - 53596101
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||  |||||| |||||||  |||||||||||||| ||  || |||||    
T  53595993 gaaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaaggttttgggtaagagtgtggtgtctctctcataacggatccta 53596092  T
Q  114 gatgtttag 122  Q
    |||||||||    
T  53596093 gatgtttag 53596101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 53596308 - 53596416
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||  |||||| |||||||  |||||||||||||| ||  || |||||    
T  53596308 gaaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaaggttttgggtaagagtgtggtgtctctctcataacggatccta 53596407  T
Q  114 gatgtttag 122  Q
    |||||||||    
T  53596408 gatgtttag 53596416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 48127932 - 48127806
Alignment:
Q  22 ggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgttta 121  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||| ||   ||||| | |||||  ||||||||| ||||||||  ||||||||| |||||    
T  48127932 ggaaacgtttgatatataagagaggagacccataaacccattgctttaatgttttggataagagtgtggtgtctttctcttagatggtcctagacgttta 48127833  T
Q  122 gctcattgccgctcccagcgctcccca 148  Q
    |  ||||||||||| || |||||||||    
T  48127832 gtccattgccgctctcatcgctcccca 48127806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 40196090 - 40195966
Alignment:
Q  162 aactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggag 260  Q
    |||||||||||||||  | |||||||||| ||||| || |||||  | ||||||||||||||||  ||||||||||||| || ||| ||||||| |||||    
T  40196090 aactggtatcagagctctggttaggcttggtggggtagcgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacacttgagggggag 40195991  T
Q  261 atcgtt-ggaaatcaagtgtgagtg 284  Q
    || ||| ||||||||||||||||||    
T  40195990 attgttgggaaatcaagtgtgagtg 40195966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 53596539 - 53596625
Alignment:
Q  45 ggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtcctagatgtttagctcattgcc 131  Q
    |||| ||||||||||||||| |||  | |||| |||||||  |||||||||||||| ||| |||||||||| |||||||||||||||    
T  53596539 ggagacccataaacccattgacttaagattttaggtaagagtgtggtgtctctctcatagcgggtcctagacgtttagctcattgcc 53596625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 16143471 - 16143607
Alignment:
Q  14 gaaattgaggaaatgttggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctctctcttagtgggtccta 113  Q
    ||||| ||| ||||||||||||||||||||| ||| ||||||| | |||||||||   ||||| |||||||  || ||||   |||||||  ||||||||    
T  16143471 gaaatggagcaaatgttggatatataagagacgagacccataagctcattgccttaaagttttgggtaagagtgtagtgt---tctcttaacgggtccta 16143567  T
Q  114 gatgtttagctcattgccgctcccagcgctccccatactc 153  Q
     |||||||   |||||||||||| ||||||||||| ||||    
T  16143568 aatgtttaatccattgccgctccaagcgctccccagactc 16143607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 32200944 - 32201051
Alignment:
Q  178 tagttaggcttgttgggggagtgggagtcga-atcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaag 276  Q
    |||||||||| | ||||||||| ||||  || |||||| ||| |||||| ||||||||||||| ||||||  ||| || ||||||| ||||| ||||||     
T  32200944 tagttaggctcgatgggggagtaggagcagagatcctaatgtagatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttgggaatcaaa 32201043  T
Q  277 tgtgagtg 284  Q
    ||||||||    
T  32201044 tgtgagtg 32201051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 279
Target Start/End: Original strand, 32201204 - 32201330
Alignment:
Q  155 cccaacaaactggtatcagagca-tagttaggcttg-ttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttg 252  Q
    ||||||||||||||||||||||  | ||| ||||   |||||| ||||||||  | |||||||||| | ||   ||||||||||||| |||||| |||||    
T  32201204 cccaacaaactggtatcagagccctggttgggctccattggggaagtgggagcgggatcctagtgtaggtccaactagtgatgtgggtgagtcacacttg 32201303  T
Q  253 agagggagatcgttggaaatcaagtgt 279  Q
    || ||||||| ||| ||||||||||||    
T  32201304 agggggagattgttagaaatcaagtgt 32201330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 54017768 - 54017694
Alignment:
Q  211 cctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgtt-ggaaatcaagtgtgagtg 284  Q
    ||||||||||||||  ||||||||||||| || ||| ||||||| ||||||| ||| || |||||||||||||||    
T  54017768 cctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtg 54017694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 43978796 - 43978721
Alignment:
Q  209 atcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttgg-aaatcaagtgtgagtg 284  Q
    ||||||||||||||||  |||||||||| || || ||| ||||||| ||||||| ||||| ||||||||||||||||    
T  43978796 atcctagtgtggatcaaactagtgatgt-ggtgattcacacttgagggggagattgttggaaaatcaagtgtgagtg 43978721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 16869735 - 16869658
Alignment:
Q  209 atcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgtt--ggaaatcaagtgtgagtg 284  Q
    ||||||||||||||||| ||||||||||||| || ||| |||||||  |||||  |||  || |||||||||||||||    
T  16869735 atcctagtgtggatcatgctagtgatgtgggtgattcacacttgaggaggagaatgttagggtaatcaagtgtgagtg 16869658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 54017656 - 54017590
Alignment:
Q  31 ggatatataagagaggaggcccataaacccattgccttggggttttcggtaagacggtggtgtctct 97  Q
    ||||||||||||||||    ||||||||||||||||||  |||||| |||||||  |||||||||||    
T  54017656 ggatatataagagagggaatccataaacccattgccttaaggttttgggtaagagtgtggtgtctct 54017590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 43978615 - 43978559
Alignment:
Q  97 tctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactc 153  Q
    |||||||  |||||||||| ||||| | |||||||||||| ||||||||||| ||||    
T  43978615 tctcttaacgggtcctagacgtttaacccattgccgctccaagcgctccccagactc 43978559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 31973674 - 31973481
Alignment:
Q  91 tgtctctctcttagtgggtcctagatgtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagcatag-ttaggcttg 189  Q
    |||||||||||||| ||||||||||  ||||||  |||| || ||||| | ||| ||| | || ||||||||| |||||||| ||| | | ||||||| |    
T  31973674 tgtctctctcttagcgggtcctagacatttagcctattgtcgttcccaacactcaccaaaatc-cccaacaaattggtatcaaagccttggttaggctcg 31973576  T
Q  190 ttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
     ||| ||||||||||  | ||||||||||||||||  ||||||||||| | |||||| ||||||| ||||||| |||||||||||||||||||||    
T  31973575 atggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagattgttggaaatcaagtgtgagtg 31973481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 272
Target Start/End: Complemental strand, 47159294 - 47159140
Alignment:
Q  118 tttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagag-catagttaggcttgttgggggagtgggagtcgaatcctagt 216  Q
    |||||||||||||||||| || || | | || ||| |||||||||| ||||||||||| | | |||||||| | || | ||||| |||| | ||||||||    
T  47159294 tttagctcattgccgctcacaacgattctcagact-tcccaacaaattggtatcagagtcctggttaggctcgatgagagagtgtgagtgggatcctagt 47159196  T
Q  217 gtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaat 272  Q
    ||||||||||||||||||||||  |||||| |||| | ||| |||| |||||||||    
T  47159195 gtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattgttggaaat 47159140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 284
Target Start/End: Complemental strand, 34666085 - 34665955
Alignment:
Q  155 cccaacaaactggtatcagag-catagttaggcttgttgggggagtgggagtcgaatcctagtgtggatcatcctagtgatgtgggcgagtcatacttga 253  Q
    ||||||||||||||||||||| | | |||||||| | |||||  |||||||  | ||||||||||||||||  ||||||||||| |  | ||| ||||||    
T  34666085 cccaacaaactggtatcagagtcctggttaggctcgctggggtggtgggagcgggatcctagtgtggatcacactagtgatgtgagtaaatcacacttga 34665986  T
Q  254 gagggagatcgttggaaatcaagtgtgagtg 284  Q
    | | ||||| ||||||||||| |||||||||    
T  34665985 gggagagattgttggaaatcatgtgtgagtg 34665955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 284
Target Start/End: Original strand, 43834341 - 43834507
Alignment:
Q  117 gtttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctag 215  Q
    |||||||  |||| ||||||| |||||||||  |||| |||||||| ||||||||||| |  | |||||||  | |||||||| || ||| | |||||||    
T  43834341 gtttagccaattgtcgctcccggcgctcccctaactc-cccaacaa-ctggtatcagaaccctggttaggcccgatgggggagcggaagtgggatcctag 43834438  T
Q  216 tgtggatcatcctagtgatgtgggcgagtcatacttgagagggagatcgttggaaatcaagtgtgagtg 284  Q
    |||||||||  ||||||||||| | || ||| |||||||  |||||| |||||   |||||||||||||    
T  43834439 tgtggatcaggctagtgatgtgagtgactcacacttgaggtggagattgttgggtttcaagtgtgagtg 43834507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 26231554 - 26231601
Alignment:
Q  15 aaattgaggaaatgttggatatataagagaggaggcccataaacccat 62  Q
    |||| ||||||| ||||||||| |||||||||||||||||||| ||||    
T  26231554 aaatggaggaaacgttggatatttaagagaggaggcccataaaaccat 26231601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 17294646 - 17294696
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctc 100  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||||||||    
T  17294646 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctc 17294696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 32168787 - 32168738
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctct 99  Q
    |||||||||||||||||||| |||||| |||||||  |||| ||||||||    
T  32168787 cccataaacccattgccttgaggttttgggtaagagtgtggcgtctctct 32168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 1780 - 1729
Alignment:
Q  50 cccataaacccattgccttggggttttcggtaagacggtggtgtctctctct 101  Q
    |||||||||||||||||||  |||||| |||||||  |||||||||||||||    
T  1780 cccataaacccattgccttaaggtttttggtaagagtgtggtgtctctctct 1729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 4088 - 3969
Alignment:
Q  118 tttagctcattgccgctcccagcgctccccatactctcccaacaaactggtatcagagca-tagttaggcttgttgggggagtgggagtcgaatcctagt 216  Q
    ||||||| |||| ||||||||| |||||| | |||| ||||||| |||||||||| |||  | ||| |||||| |||||| | |||||| |  |||||||    
T  4088 tttagcttattgtcgctcccagtgctccctagactc-cccaacatactggtatcatagccctggttgggcttgatgggggtgcgggagtgggttcctagt 3990  T
Q  217 gtggatcatcctagtgatgtg 237  Q
    ||||||||   ||||||||||    
T  3989 gtggatcaagatagtgatgtg 3969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University