View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14140_low_7 (Length: 250)
Name: NF14140_low_7
Description: NF14140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14140_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 29647896 - 29648131
Alignment:
| Q |
15 |
tatggaagaaaggacactgcatagaaaagatctctatattgttttaccctcatgcagtatccatagtcttgagtcttatagctcccagttatatagtaac |
114 |
Q |
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| T |
29647896 |
tatggaagaaaggacactgcatagaaaagatctctatattgttttaccctcatgcagtatccatagtcttgagtcttatagctcccagttatatagtaac |
29647995 |
T |
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| Q |
115 |
atgccataaactctaggctccttagcattggaacctataaagaaattatatatgtaactattaatataagagattaattttgatgtactatcagtgtaaa |
214 |
Q |
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| T |
29647996 |
atgccataaactctaggctccttagcattggaacctataaagaaat----catgtaactattaatataagagattaattttgatgtactatcagtgtaaa |
29648091 |
T |
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| Q |
215 |
actatttaca----gtatcagccaatcataaaccatcatg |
250 |
Q |
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|||||||||| ||||| |||||||||||||||||| |
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| T |
29648092 |
actatttacactatatatcaatcaatcataaaccatcatg |
29648131 |
T |
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