View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_high_7 (Length: 265)
Name: NF14141_high_7
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 13811302 - 13811524
Alignment:
| Q |
9 |
gaagaatatagtggagaaccaagtgcatatgatttcttaggatgacatccttgaaaaggagcaacggtaataacactattacaaagatgttgtggttgtt |
108 |
Q |
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| T |
13811302 |
gaagaaaatagtggagaaccaagtgcatatgatttctttggatgacatccttgaaaaggagcaactgtaataacactattacaaagatgttgtggttgtt |
13811401 |
T |
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| Q |
109 |
caaatattgacaaattagaaaatatagtgcaaatggaatccctgatcactctaatttgggaaaatattgttaaatgttaatgtctcaagtgtgagttcct |
208 |
Q |
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| T |
13811402 |
caaatattgacaaattagaaaatatagtacaaatggaatccttgatcactctaatttgggaaaatat-------tgttaatatgtcaagtgtgagtt-ct |
13811493 |
T |
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| Q |
209 |
acattgaatgaaaaagtagatgttgagtagt |
239 |
Q |
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| T |
13811494 |
acattgaatgaaaaagtagatgttgagtagt |
13811524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 3364165 - 3364230
Alignment:
| Q |
101 |
tggttgttcaaatattgacaaatt---agaaaatatagtgcaaatggaatccctgatcactctaat |
163 |
Q |
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| T |
3364165 |
tggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaat |
3364230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 3391741 - 3391676
Alignment:
| Q |
101 |
tggttgttcaaatattgacaaatt---agaaaatatagtgcaaatggaatccctgatcactctaat |
163 |
Q |
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| T |
3391741 |
tggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaat |
3391676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 3347211 - 3347170
Alignment:
| Q |
105 |
tgttcaaatattgacaaattagaaaatatagtgcaaatggaa |
146 |
Q |
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| T |
3347211 |
tgttcaaagattgacaaattagaaagtaaagtgcaaatggaa |
3347170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 3398725 - 3398659
Alignment:
| Q |
101 |
tggttgttcaaatattgacaaatt---agaaaatatagtgcaaatggaatccctgatcactctaatt |
164 |
Q |
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| T |
3398725 |
tggttgttcaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaatt |
3398659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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