View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_1 (Length: 440)
Name: NF14141_low_1
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 25787457 - 25787875
Alignment:
| Q |
1 |
gccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggagggaggaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
25787457 |
gccaatgacacaatcaaactagacttggaacagaacaagataaccgatttcatcaaatttgatgtggggaatgttgttatggtgactggaggaaggaaca |
25787556 |
T |
|
| Q |
101 |
gaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgcaacccgatt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787557 |
gaggtcgtgttggtttcatcaagaacagaaagaaacacatgggcacttttgagacgattcatgtccaggatgctgctggtcatgagtttgcaacccgatt |
25787656 |
T |
|
| Q |
201 |
gggtaatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggctaggaagcgg |
300 |
Q |
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| T |
25787657 |
gggtaatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggctaggaagcgg |
25787756 |
T |
|
| Q |
301 |
atggctgcttctcaacaggctgcagctgcttaaatttgattgcattatattgctggacaatttagccatttagattgtttgcgacctttttgcggctaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787757 |
atggctgcttctcaacaggctgcagctgcttaaatttgattgcattatattgctggacaatttagccatttagattgtttgcgacctttttgcggctaat |
25787856 |
T |
|
| Q |
401 |
atgacatgacaattctatt |
419 |
Q |
| |
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| T |
25787857 |
atgacatgacaattttatt |
25787875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 4139758 - 4139469
Alignment:
| Q |
4 |
aatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggagggaggaacagag |
103 |
Q |
| |
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|||||||| |||||||| ||| | ||| | |||||||| || ||||| ||||| ||||||||||||||| |||| ||||| || ||||| ||||| |||| |
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| T |
4139758 |
aatgacaccatcaaacttgaccttgaaaacaacaagatcactgattttatcaagtttgatgtggggaatgttgtcatggttaccggaggaaggaatagag |
4139659 |
T |
|
| Q |
104 |
gtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgcaacccgattggg |
203 |
Q |
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| T |
4139658 |
gtcgtgttggtgtcatcaagaacagagagaaacataaaggaacttttgagactattcacgttcaggatgcaagtggtcatgagtttgccactcggctggg |
4139559 |
T |
|
| Q |
204 |
taatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggctag |
293 |
Q |
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| T |
4139558 |
caatgtgtttactattggcaaaggaacaaaaccttgggtgtctcttcctaaaggtaaaggtatcaagttgactgttattgaagaggctag |
4139469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 7109426 - 7109133
Alignment:
| Q |
4 |
aatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggagggaggaacagag |
103 |
Q |
| |
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|||||||||||||| || ||| | || |||||||||| ||||||||||||||| ||||| |||||| | || ||||| ||||| || | ||| || | |
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| T |
7109426 |
aatgacacaatcaagctggaccttgaggaaaacaagattgtcgatttcatcaaattcgatgttgggaatgtagtgatggttactggtggtaagaataggg |
7109327 |
T |
|
| Q |
104 |
gtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgcaacccgattggg |
203 |
Q |
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| T |
7109326 |
ggcgtgttggagtgatcaagaacagagaaaagcataagggaacctttgagacaatccacgttcaggatgccactggtcatgagtttgcaactcgtctggt |
7109227 |
T |
|
| Q |
204 |
taatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggctaggaag |
297 |
Q |
| |
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||||| ||||| ||||||| ||| | || || ||||| ||||||||||| || | ||||| ||||| || ||||||||||| ||||||||| |
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| T |
7109226 |
caatgtgttcactattggcaaggggacaaagccatgggtatctcttcccaagggtaagggtattaaattaactgtcattgaggaagctaggaag |
7109133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 19326864 - 19326687
Alignment:
| Q |
46 |
gatttcatcaaatttgatgtggggaatattgttatggtgactggagggaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggca |
145 |
Q |
| |
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|||||||||||||||||||| ||||| | |||||||| ||||| || | ||| || || |||||||| | || |||||||||||||| || | ||| | |
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| T |
19326864 |
gatttcatcaaatttgatgttgggaacgtcgttatggttactggtggtaagaataggggacgtgttggagtgattaagaacagagagaagcataagggaa |
19326765 |
T |
|
| Q |
146 |
cttttgagaccattcatgtccaggatgctgctggtcatgagtttgcaacccgattgggtaatgtcttcaccattggca |
223 |
Q |
| |
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| || ||||| || || || |||||||| ||||||||||||| ||||| || |||| ||||| || || ||||||| |
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| T |
19326764 |
cattcgagacaatccacgttcaggatgccactggtcatgagttcgcaactcgtttggtcaatgtgtttactattggca |
19326687 |
T |
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