View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_10 (Length: 256)
Name: NF14141_low_10
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 25787212 - 25787454
Alignment:
| Q |
11 |
gaagcaaaggtctgtctaatccttcacaatatctataatttttattcataaagttacactgtttcataatttatatagactacatcctggagcctt-ttt |
109 |
Q |
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| T |
25787212 |
gaagcaaaggtttgtctaatccttcacaatatctataaattttatgca---agttacattatctcataatttatataaactacatgctggaaccttcttt |
25787308 |
T |
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| Q |
110 |
atattgannnnnnnaatctgccctctctctccaaccttttgcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatct |
209 |
Q |
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| T |
25787309 |
ttattgattttat-aatctgccctccctcttcaaccttttgcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatct |
25787407 |
T |
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| Q |
210 |
gaacacctatgatgggcgtacaatccgctatcctgatccccttatta |
256 |
Q |
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| T |
25787408 |
gaacacctatgatgggcgtacaatccgctatcctgatccccttatta |
25787454 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 4139870 - 4139772
Alignment:
| Q |
150 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatcc |
248 |
Q |
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| T |
4139870 |
gcagtttaagctctgcaaggttcgatctgttcaattcggacagaagggcattccctatctgaacacctatgatggtcgcaccatccgttatccagatcc |
4139772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 7109538 - 7109443
Alignment:
| Q |
150 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctga |
245 |
Q |
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| T |
7109538 |
gcagtttaagctgtgcaaggtgcgttcagtgcaatttgggcagaaaggtatcccatacctgaacacctatgatggtcgcactatccgctaccctga |
7109443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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