View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_12 (Length: 215)
Name: NF14141_low_12
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 6721271 - 6721454
Alignment:
| Q |
19 |
attttacaccaaactacatcgtcattcaaacaaatttagcagtgtnnnnnnnnnnnnntggggaaattattaggttacaattgttgttttttggtttcct |
118 |
Q |
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| T |
6721271 |
attttacaccaaactacatcatcattcaaacaaatttagcagtgtgaaaagaaaaaaatagggaaaatattaagttacaattgttgttttttggtttcct |
6721370 |
T |
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| Q |
119 |
ctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgacataccttattatgttttctcaccacaggtt |
202 |
Q |
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| T |
6721371 |
ctattttgagttgaatgaaatatttaacatttttcttatctgcatcgtattgacataccttattatgttttctcaccagaggtt |
6721454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 6716619 - 6716687
Alignment:
| Q |
105 |
ttttttggtttcctct--attttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattga |
171 |
Q |
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| T |
6716619 |
ttttttggtttcctctctattttgagttgagtgaaatatttaacatttttcatgtatgcaatgtattga |
6716687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 6721754 - 6721791
Alignment:
| Q |
105 |
ttttttggtttcctctattttgagttgaatgaaatatt |
142 |
Q |
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| T |
6721754 |
ttttttggtttcctctttttttagttgaatgaaatatt |
6721791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 42230689 - 42230614
Alignment:
| Q |
96 |
caattgttgttttttggtttcctctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgac |
172 |
Q |
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| T |
42230689 |
caattgttattttttggtttcctttgttttgagttgaatg-aatatttaacatttttcatgtatgcatcgtattgac |
42230614 |
T |
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