View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_2 (Length: 428)
Name: NF14141_low_2
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 168 - 409
Target Start/End: Complemental strand, 33269790 - 33269549
Alignment:
| Q |
168 |
tcaacaacatgtaagacacaacatatccataatccacgatcaaccatgaaaccaaaacctcatcattttcatcttcatctcaaccttgtctcattttctt |
267 |
Q |
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| T |
33269790 |
tcaacaacatgtaagacacaacatatccataatccacgatcaaccatgaaaccaaaacctcatcattttcatcttcatcacaaccttgtctcattttctt |
33269691 |
T |
|
| Q |
268 |
caaaacctcactacaaaaaccatgacatcctctacacaatctcagaatccatcaacacaatccacaacaacaatcccaaccctgattactctctcaaccc |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33269690 |
caaaacctcactacaaaaaccatgacatcctctacacaatctcagaatccatcaacacaatccacaacaacaatcccaaccctgattactctctcaaccc |
33269591 |
T |
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| Q |
368 |
aactctcaaacgcattctcccatctctcacttctcaccacat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33269590 |
aactctcaaacgcattctcccatctctcacttctcaccacat |
33269549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 33269976 - 33269820
Alignment:
| Q |
15 |
caaaggaatgagcaaaaactgagagggaggagcaattttcatcccaattagtgtgtcatggcccatcatctatcccatagcaaaagcagtaacaaacaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33269976 |
caaaggaatgagcaaaaactgagagggaggagcaattttcatcccaattagtgtgtcatgtcccatcatctatcccatagcaaaagcagtaacaaacaat |
33269877 |
T |
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| Q |
115 |
agaacacacactgtcaccatctcactcacattacaccaagttcaaacagaaattcaa |
171 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33269876 |
agaacacacactgtcaccatctcactcacataacaccaagttcaaacagaaattcaa |
33269820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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