View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_5 (Length: 339)
Name: NF14141_low_5
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 327
Target Start/End: Complemental strand, 1307330 - 1307035
Alignment:
| Q |
34 |
cctagaactaaatcaagttcataaacgttcaaattaacaccaaaagagtgaataagtaagaataccttgacgaaaatttccggaactttatcaccaattg |
133 |
Q |
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| T |
1307330 |
cctagaactaaatcaagttcataaacgttcaaattaacaccaaaagagtgaataagtaagaataccttgacgaaaatttccggaactttatcaccaattg |
1307231 |
T |
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| Q |
134 |
caagccgtttcggatctcttccacctgtttcatcaaaatctcat--caattaactaccaaaacacacacaaaattaacatataattacacgattaaataa |
231 |
Q |
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| T |
1307230 |
caagccgtttcggatctcttccacctgtttcatcaaaatctcatatcaattaactaccaaaacacacacaaaattaacatataattacacaattaaataa |
1307131 |
T |
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| Q |
232 |
ataaaactgaaaattcgtgttaccttcagtgattaagcaaattgacttgcgcttacgggattgaaacgaagttgaattttggaactgaaatgagaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1307130 |
ataaaactgaaaattcgtgttaccttcagtgattgagcaaattgacttgcgcttacgggattgaaacgaagttgaattttggaactgaaatgagaa |
1307035 |
T |
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