View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_7 (Length: 288)
Name: NF14141_low_7
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_7 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 5315490 - 5315775
Alignment:
| Q |
1 |
gagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5315490 |
gagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggat |
5315589 |
T |
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| Q |
101 |
ggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggtaataatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
5315590 |
ggttataaggattgaagcacttcaaaatttaactatcatcaccgcagctttgttgctaattcttgttcctcgtggatacgtgtcgccaggtaataatgtt |
5315689 |
T |
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| Q |
201 |
gcataagagatcatctgcgatgacatgattttgctaatactgacaattctcggcaattctcctgttctttgtctccaggacttgtggg |
288 |
Q |
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| T |
5315690 |
gcataagagatcatatgtgatgacatgattttgctaatactgacaattctcggcaattctcctgttc--tgtctccaggacttgtggg |
5315775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 5308513 - 5308709
Alignment:
| Q |
1 |
gagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggat |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
5308513 |
gagcattcaacatggtagatagattttacaaaaattacttaaaacttgtggactcagatgcttcattgttctttcattctaatgtggccatggaatgggt |
5308612 |
T |
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| Q |
101 |
ggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggtaataat |
197 |
Q |
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| T |
5308613 |
ggttttaaggattgaagcaattcaaaatataactgtcatcactgcagctttgttgcttattctacttccttgtggatatgtgtccccaggtagtaat |
5308709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5280836 - 5280640
Alignment:
| Q |
1 |
gagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggat |
100 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
5280836 |
gagcattcaacatggtagacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcgatgcaatggat |
5280737 |
T |
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| Q |
101 |
ggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggtaataat |
197 |
Q |
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| T |
5280736 |
ggttttaaggattgaagcacttcaaaacttgactgtcatcacagcagctttgttgcttattctacatcctcagggatatgtatcaccaggtaataat |
5280640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 5288846 - 5288653
Alignment:
| Q |
4 |
cattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggatggt |
103 |
Q |
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|||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| || ||||||||| |||| |
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| T |
5288846 |
cattcaacatggtagacagatttttcaaaaactacttgaaacttgtggacacagatgcttcattgttctttcattcaaatggggccatggaatgggtggt |
5288747 |
T |
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| Q |
104 |
tataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggtaataat |
197 |
Q |
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| T |
5288746 |
tttaaggattgaagcacttcaaaacttgactgtcatcactgcagctcttttgcttattctacttcctcagggatatgtatccccaggtaataat |
5288653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 14948062 - 14947878
Alignment:
| Q |
11 |
catggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggatggttataagg |
110 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| ||||| |
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| T |
14948062 |
catggtagacagatttttcaaaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcaatggaatgggtagttgtaagg |
14947963 |
T |
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| Q |
111 |
attgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggtaata |
195 |
Q |
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| T |
14947962 |
gttgaagcacttcaaaacttgactgtcatcactgcagctttgctgattattctacttcctcggggatatgtatcgccaggtaata |
14947878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 15127279 - 15127472
Alignment:
| Q |
1 |
gagcattcaacatggtagatggattttacaaaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatggat |
100 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||| | |
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| T |
15127279 |
gagcattcaacatggtagacagatttttcaaaaactacttaaaacttgtggatacagatgcttcattgttctttcattccaatgtggcaatggaatggtt |
15127378 |
T |
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| Q |
101 |
ggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggtaat |
194 |
Q |
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||| |||||||||||||||||| |||||| ||| ||||||| ||||||||| | || ||||| |||||| ||||| | |||||||||||| |
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| T |
15127379 |
agttttaaggattgaagcacttctaaatttgactgtcatcactgcagctttgctactcattctacttcctcaaagatatctatccccaggtaat |
15127472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 31524943 - 31524751
Alignment:
| Q |
1 |
gagcattcaacatggtagatggattttacaaaaactac-ttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatgga |
99 |
Q |
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||||||||||||||||||| || || ||| ||||| ||||||||||| |||| ||||||| | ||||||||||||||||||| | ||||| |||| |
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| T |
31524943 |
gagcattcaacatggtagacagacttatgaaatactactttaaaacttgtcgacacagatgctacgctgttctttcattctaatgttgccatggagtgga |
31524844 |
T |
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| Q |
100 |
tggttataaggattgaagcacttcaaaatttaactctcatcaccgcagctttgttgctaattcttgttcctcgtggatatgtgtccccaggta |
192 |
Q |
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| T |
31524843 |
tggttataaggattgaggcacttcaaactttgacagttatcactgcagcattgttgcttattctacttcctcatggatatgtgtctccaggta |
31524751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 113952 - 114019
Alignment:
| Q |
31 |
aaaactacttaaaacttgtggacaaagatgcttcattgttctttcattctaatgtgggaatggaatgg |
98 |
Q |
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| T |
113952 |
aaaactacttaaaacttgtggacacagatgcttcattgttctttcattctaatgtggcaatggaatgg |
114019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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