View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14141_low_9 (Length: 264)
Name: NF14141_low_9
Description: NF14141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14141_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 1021498 - 1021742
Alignment:
| Q |
7 |
gtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaaaattccggtgaagcttcc |
106 |
Q |
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| T |
1021498 |
gtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgccggaaaattccggtgaagcttcc |
1021597 |
T |
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| Q |
107 |
tcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatcaaaatgaatcaacagcttctgaa |
206 |
Q |
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| T |
1021598 |
tcacattctttccgattcaagcgtttgttcaacgccgagaagcgattttccgaactggttcattccaaccgcgcatcaaaatgaatcaacagcttctgaa |
1021697 |
T |
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| Q |
207 |
acttcttctgtttggaattgggaaaattttcaacctcctccttct |
251 |
Q |
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| T |
1021698 |
acttcttctgtttggaattgggagaattttcaacctcctccttct |
1021742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 4970931 - 4971014
Alignment:
| Q |
97 |
tgaagcttcctcacattctttccgattcaagcgtttg---------ttcaacgccgagaagcgagtttccgaactggttcattc |
171 |
Q |
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| T |
4970931 |
tgaagcttcctcacattctttccaattcaagcatttgtagcatttgttcaacgccgagaagcgagtttccgaactggttcattc |
4971014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 6344897 - 6344803
Alignment:
| Q |
97 |
tgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatcaaaatgaa |
191 |
Q |
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| T |
6344897 |
tgaagcttcctcacattttttctgattcaagcatttgttcaatgtcgagaagcgagtttccgaactggttcattccaaccgcgcatcaaaatgaa |
6344803 |
T |
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