View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_high_13 (Length: 450)
Name: NF14142_high_13
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 36675220 - 36675453
Alignment:
| Q |
16 |
ataggattagaaaaacaatagtaacagattagattattcaaatgtttactcaattcaaagactaagacattgtttagtttgattgtggaaggggtgagga |
115 |
Q |
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| T |
36675220 |
ataggattagaaaaacaatagtaacagattagattattcaaatgtttactcaattcaaagactaagacattgtttagtttgattgtggaaggggtgagga |
36675319 |
T |
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| Q |
116 |
aaacattatcataattttcttgacactgggattagagaggtctgaatcctcaacagcaattttgtctacaaccccctctgctgcactattctcatctgtt |
215 |
Q |
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| T |
36675320 |
aaacattatcataattttcttgacgctgggattagataggtctgaatcctcaacagcaattttgtctacaaccccctctgctgcactattctcatctgtt |
36675419 |
T |
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| Q |
216 |
ggattaatccaatgatcgagatatttattaagca |
249 |
Q |
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| T |
36675420 |
ggattaatccaatgatcgagatatttattaagca |
36675453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 297 - 432
Target Start/End: Original strand, 36675502 - 36675637
Alignment:
| Q |
297 |
ataccctatagaaaacgagctttggaaaaagattttggtgtggtcttggtaataggtaaagacttcaaggaaaggaggagaatcggtaacataacgttac |
396 |
Q |
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| T |
36675502 |
ataccctatagcaaacgagctttggaaaaagattttggtgtggtcttggtaataggtaaagacttcaaggaaaggaggagactcggtaacataacgttac |
36675601 |
T |
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| Q |
397 |
cggttcctacatttgctgcaccatagtccctacaac |
432 |
Q |
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| T |
36675602 |
cggttcctacatttgctgcaccatagtccctacaac |
36675637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 297 - 432
Target Start/End: Original strand, 36695179 - 36695314
Alignment:
| Q |
297 |
ataccctatagaaaacgagctttggaaaaagattttggtgtggtcttggtaataggtaaagacttcaaggaaaggaggagaatcggtaacataacgttac |
396 |
Q |
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| T |
36695179 |
ataccctataggaaacgagctttggaaaaagattttggtgtggtcttggtaataggtaaagagttaaaagaaaggaggagaatcggtaacataacattac |
36695278 |
T |
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| Q |
397 |
cggttcctacatttgctgcaccatagtccctacaac |
432 |
Q |
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| T |
36695279 |
cggttcccacaactgctgcaccatagtccctacaac |
36695314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 36694963 - 36695126
Alignment:
| Q |
86 |
tgtttagtttgattgtggaaggggtgaggaaaacattatcataattttcttgacactgggattagagaggtctgaatcctcaacagcaattttgtctaca |
185 |
Q |
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||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
36694963 |
tgtttagtttgattgtggaagggatgacgaaagcattatcataattttcttgacactgggattatagaggtctgaatcctcaa---caattttgtctaca |
36695059 |
T |
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| Q |
186 |
accccctctgctgcactattctcat------ctgttggattaatccaatgatcgagatatttattaa |
246 |
Q |
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| T |
36695060 |
gccccctctgctgcactattctcatccgttcccgttggattaatccaatgattgagatatttattaa |
36695126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 36694922 - 36694968
Alignment:
| Q |
17 |
taggattagaaaaacaatagtaacagattagattattcaaatgttta |
63 |
Q |
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|||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
36694922 |
taggatcagataaacaatagtaacaaattagattattcaaatgttta |
36694968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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