View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14142_high_18 (Length: 405)
Name: NF14142_high_18
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Complemental strand, 41484237 - 41483846
Alignment:
| Q |
5 |
tgaagaatatgagggattggtgcaaacagattgacacagaagacaaaatggtagagtaaggaatgataacaacactttttgtgattggtccatttttaaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41484237 |
tgaagaatatgagggattggtgcaaacaaattgacacagaagaccaaatggtagagtaaggaatgctaacaacactttttgtgattggtccatttttaaa |
41484138 |
T |
|
| Q |
105 |
gaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcacaaaagtgtgttcatgagagggttaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41484137 |
gaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaattttagaaattgacctatcacaaaagtgtgttcatgagagggttaa |
41484038 |
T |
|
| Q |
205 |
aaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41484037 |
aaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtga |
41483938 |
T |
|
| Q |
305 |
ttatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41483937 |
ttatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
41483846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 56 - 396
Target Start/End: Complemental strand, 40751400 - 40751052
Alignment:
| Q |
56 |
tagagtaaggaatgataacaacactttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgtta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40751400 |
tagagtaaggaatgataacaacactttttgtgattggtccatttttaaagaagccaatttagttctcctgtaaattgatcactttcaaagaaatgtgtta |
40751301 |
T |
|
| Q |
156 |
aaattttagaaattgacctatcac--aaaagtgtgttcatgagagggttaaaa-------ggagagaataattcatttagcattgctatcataaattaaa |
246 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| | ||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |
|
|
| T |
40751300 |
aaattttagaaacagac-tatcaggaaaaagtgtgtttaagagagggttaaaacttaaaaggagagaattattcatctagcattgctaccataaattcaa |
40751202 |
T |
|
| Q |
247 |
agagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaata |
346 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
40751201 |
agagccaaaatacattacatgtttcttctcaaaatatagcttggttctctcattgtgattatctgcttgacgcttctgtagatccttctcacgggacata |
40751102 |
T |
|
| Q |
347 |
agctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40751101 |
agttcattcctccgagcttccagttccagcctggatttttcatgatcctt |
40751052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 58 - 396
Target Start/End: Complemental strand, 41477143 - 41476803
Alignment:
| Q |
58 |
gagtaaggaatgataacaacactttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaa |
157 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
41477143 |
gagtaaggaatgctaacgacactttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagtaatgtgttata |
41477044 |
T |
|
| Q |
158 |
atttta-gaaattgacctatcacaaaa-gtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaa |
255 |
Q |
| |
|
||||| ||||| ||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || |
|
|
| T |
41477043 |
tttttaagaaatagacctatcagaaaaagtgtgttcaagagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaa |
41476944 |
T |
|
| Q |
256 |
atacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttc |
355 |
Q |
| |
|
||||||||||| || |||||||| |||||||||| | |||||||| |||||||| ||| |||||||||||||||||| |||||||| |||| || ||| |
|
|
| T |
41476943 |
atacattacatttttcttctcaagatatagcttgtttctctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattc |
41476844 |
T |
|
| Q |
356 |
ctccgagcttccagttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
||||||| |||||||||| |||| ||| ||||||||||||| |
|
|
| T |
41476843 |
ctccgagtttccagttcctgcctagctatttcatgatcctt |
41476803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 396
Target Start/End: Complemental strand, 41470113 - 41469791
Alignment:
| Q |
72 |
aacaacactttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaattgatcactttcaaagaaatgtgttaaaatttt-agaaattg |
170 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| |||| ||||||||| ||||||||| ||||| |||| | | |
|
|
| T |
41470113 |
aacaatactttttgtgattggtccacttttaaagaagccgatttagtt---ctgtaaaatgatgactttcaaa-aaatgtgttgggattttaagaagtag |
41470018 |
T |
|
| Q |
171 |
acctatca-caaaagtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgtt |
269 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||| |||| ||| | |||||||||||||||| ||||||| |||||| ||| | |||||||| |
|
|
| T |
41470017 |
acctatcagaaaaagtgtgttcaagagagcattaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggc |
41469918 |
T |
|
| Q |
270 |
gcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccag |
369 |
Q |
| |
|
| ||| ||||||| |||| | |||| ||| ||||||| ||| || ||||||||||||||| ||||| || |||||||| |||||||||||||| || |
|
|
| T |
41469917 |
ccgtctgaaaatattgcttatttctctcgatgtaattatcttcttgacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctag |
41469818 |
T |
|
| Q |
370 |
ttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
|| || |||||||||||| |||||| |
|
|
| T |
41469817 |
ttgaagaatggctttttcataatcctt |
41469791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 16408850 - 16408986
Alignment:
| Q |
260 |
attacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctcc |
359 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||| || ||| |
|
|
| T |
16408850 |
attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcacgggacataagctcatttttcc |
16408949 |
T |
|
| Q |
360 |
gagcttccagttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16408950 |
aagcttctagttccagcctggctttttcatgatcctt |
16408986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 228 - 396
Target Start/End: Complemental strand, 52472101 - 52471933
Alignment:
| Q |
228 |
attgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcag |
327 |
Q |
| |
|
||||||| |||||| | ||||||| ||||| ||||| |||| | |||||| ||||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
52472101 |
attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag |
52472002 |
T |
|
| Q |
328 |
atccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
|||| | |||||||| ||||| || ||||||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
52472001 |
atccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatcctt |
52471933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 396
Target Start/End: Original strand, 16413102 - 16413410
Alignment:
| Q |
72 |
aacaacactttttgtgattggtccatttttaaagaagcaaatttagttctcctgtaaatt-gatcactttcaaagaaatgtgttaaaatttta-gaaatt |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||| ||||||||| ||||||| ||| |||||| ||||| |
|
|
| T |
16413102 |
aacaacactttttgtgattggtccacttttaaagaagccgatttagttct---gtaaatttgatgactttcaaa-aaatgtgctaagattttaagaaata |
16413197 |
T |
|
| Q |
170 |
gacctatcacaaaa-gtgtgttcatgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgt |
268 |
Q |
| |
|
||||||||| |||| ||||||||| ||||| ||| | || ||||||||||||| |||||||| ||||||| ||||| ||||||||| |
|
|
| T |
16413198 |
gacctatcaaaaaaagtgtgttcaagagag--------------aattactc-tttagcattgctaccataaattcaaagagctaaaataaattacatgt |
16413282 |
T |
|
| Q |
269 |
tgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttcca |
368 |
Q |
| |
|
| | | |||||||||||| | || || ||||||||||| ||| ||||||||||||||||| || || | ||||| || |||||| | ||||||| |
|
|
| T |
16413283 |
tttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgcttctgcagatccttttctcgtaacataagttcattcctcagcgcttcca |
16413382 |
T |
|
| Q |
369 |
gttccagcctggctttttcatgatcctt |
396 |
Q |
| |
|
||||||| |||||||||| |||||||| |
|
|
| T |
16413383 |
gttccagtatggctttttcttgatcctt |
16413410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University