View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_high_3 (Length: 667)

Name: NF14142_high_3
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_high_3
NF14142_high_3
[»] chr6 (5 HSPs)
chr6 (463-657)||(32061845-32062039)
chr6 (265-344)||(32061626-32061705)
chr6 (142-199)||(32061505-32061562)
chr6 (18-64)||(32061382-32061428)
chr6 (396-441)||(32061759-32061804)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 463 - 657
Target Start/End: Original strand, 32061845 - 32062039
Alignment:
Q  463 ttgttggatagaggtaaattccccttttggttatgtgatgcttcaatgatataccaccaatctttaacaatgttttcctttttctggtgttattgaattt 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061845 ttgttggatagaggtaaattccccttttggttatgtgatgcttcaatgatataccaccaatctttaacaatgttttcctttttctggtgttattgaattt 32061944  T
Q  563 gctaatctaaaagatttggcgaaaattcggattaattttgttagtttgttggaaggattgagaaattttttgggcttaactttggttgttctctg 657  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061945 gctaatctaaaagatttggcgaaaattcggattaattttgttagtttgttggaaggattgagaaattttttgggcttaactttggttgttctctg 32062039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 32061626 - 32061705
Alignment:
Q  265 atgaagttttatagtatattaatttgattacgaatgagggttcttgaggaaattaaatgattaatttaatatgtttggtc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061626 atgaagttttatagtatattaatttgattacgaatgagggttcttgaggaaattaaatgattaatttaatatgtttggtc 32061705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 32061505 - 32061562
Alignment:
Q  142 ataaaattattatgaagagggttcttgatgaaatgattaatgataagaattaagaata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061505 ataaaattattatgaagagggttcttgatgaaatgattaatgataagaattaagaata 32061562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 32061382 - 32061428
Alignment:
Q  18 atatgatggtagctgatgaatgcttttggtttttgaggaaatggtta 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32061382 atatgatggtagctgatgaatgcttttggtttttgaggaaatggtta 32061428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 32061759 - 32061804
Alignment:
Q  396 cttgaggaaatgattaatgatagaactgttatgtttgaatttgaac 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32061759 cttgaggaaatgattaatgatagaactgttatgtttgaatttgaac 32061804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University