View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_high_32 (Length: 277)
Name: NF14142_high_32
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 1720802 - 1720535
Alignment:
| Q |
1 |
aaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtaca |
100 |
Q |
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| T |
1720802 |
aaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtaca |
1720703 |
T |
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| Q |
101 |
tgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcccaatagaatccatacgcgtcctcacaggtatctg |
200 |
Q |
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| T |
1720702 |
tgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcccaatagaatccatacgcgtcctcacaggtatctg |
1720603 |
T |
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| Q |
201 |
cgtttgaaannnnnnncatacaatgataatttgatgcatgtattcggttaatgtttatttatttattt |
268 |
Q |
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| T |
1720602 |
ctattgaaatttttttcatacaatgataatttgatgcatgtattcggttaatgtttatttatttattt |
1720535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 18372753 - 18372915
Alignment:
| Q |
3 |
aaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatg |
102 |
Q |
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|||||||||| |||||||||| | ||||||||||||||| | | | ||||||| | | ||||||||||||||| |||| ||| ||||| | |||| | |
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| T |
18372753 |
aaatgcatcaggccattcctcgtcgttgttgtctacaacaatcacccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaag |
18372851 |
T |
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| Q |
103 |
ctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattccc |
167 |
Q |
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| T |
18372852 |
ctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaacggttaacaattttgcattccc |
18372915 |
T |
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