View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_high_33 (Length: 268)
Name: NF14142_high_33
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 40181820 - 40182084
Alignment:
| Q |
1 |
atgaagtggatgatgatgatgattgacttagaaagttggagaaaatgaccttgttagggttaggaattcttcgtgtggatgatgatgaggaggaag---- |
96 |
Q |
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| T |
40181820 |
atgaagtggatgatgatgatgattgacttagaaagttggagaaaatgaccttgttagggttaggaattcttcgtgtggatgatgataaggaggaagaaga |
40181919 |
T |
|
| Q |
97 |
--aagaagaagtgatgtagttcctgccatatcttgctgcaaacgacacccacatcttcttatatatagtttgcgagtgagaatcggttggagacaaacgg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
40181920 |
agaagaagaagtgatgtagttcctgccatatcttgctgcaaacgacacccacatctgcatatatatagtttgcgagtgagaatcggttggagacagacgg |
40182019 |
T |
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| Q |
195 |
cacacacacggctaggtttaggtttactgagcgattgagaatgttgaactctaacctatgcttct |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40182020 |
cacacacacggctaggtttaggtttactgagcgattgagaatgttgaactctaacctatgtttct |
40182084 |
T |
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