View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_high_36 (Length: 247)
Name: NF14142_high_36
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 34229088 - 34228872
Alignment:
| Q |
1 |
tggttttggtgtgattgcaaccattttcctttgtctcctttgagcaatgaatccatcatgattctaacattactaccatcaccaatccgccatctacaac |
100 |
Q |
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| T |
34229088 |
tggttttggtgtgattgcagccattttcctttgtctcctctgagcaatgaatccatcatgattctaacattactaccatcaccaatccgccatctacaac |
34228989 |
T |
|
| Q |
101 |
catgtaaaatcacatatctagtattccaaatactactctaggcataactagggctgtgactaatgtcagcttcaagaaaaaatatgtgtgaagaaagtat |
200 |
Q |
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| T |
34228988 |
catgtaaaatcacatatctagtattccaaatactacgctaggcataactagggctgtgactaatgtcagcttcaagaaaaaatatgtgtgaagaaagtat |
34228889 |
T |
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| Q |
201 |
cttgctttgagaattat |
217 |
Q |
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||||||||||||||||| |
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| T |
34228888 |
cttgctttgagaattat |
34228872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 34237548 - 34237494
Alignment:
| Q |
159 |
actaatgtcagcttcaagaaaaaatatgtgtgaagaaagtatcttgctttgagaatt |
215 |
Q |
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| T |
34237548 |
actaatgtcagcttcaagaaaa--tatgtgtggagaaagtatattgatttgagaatt |
34237494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 46889100 - 46889177
Alignment:
| Q |
57 |
catgattctaacattactaccatcaccaatccgccatctacaaccatgtaaaatcacatatctagtattccaaatact |
134 |
Q |
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| T |
46889100 |
catgattctaacattcttaccatcaccaatcctccatctacaagcatgtgaaaacacatgtctagaattccaaatact |
46889177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 42093134 - 42093100
Alignment:
| Q |
75 |
accatcaccaatccgccatctacaaccatgtaaaa |
109 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
42093134 |
accatcaccaatcctccatctacaaccatgtaaaa |
42093100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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