View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14142_low_1 (Length: 714)
Name: NF14142_low_1
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 696
Target Start/End: Original strand, 14868730 - 14869425
Alignment:
| Q |
1 |
attcattcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnnnnnnnnnngggtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14868730 |
attcattcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcatcatcatcagggtaa |
14868829 |
T |
|
| Q |
101 |
gnnnnnnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14868830 |
gaaaaaaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaat |
14868929 |
T |
|
| Q |
201 |
gctaaaagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14868930 |
gctaaaagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccata |
14869029 |
T |
|
| Q |
301 |
atcaccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869030 |
atcaccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaag |
14869129 |
T |
|
| Q |
401 |
tacctggtttggcacaaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaatt |
500 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869130 |
tacctggtttggcacgaggaatggaaagcttcaacgccgacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaatt |
14869229 |
T |
|
| Q |
501 |
caaacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggtta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14869230 |
caaacaacaattccgtgacatgaaacctgatttcatagtcactgacatgttctatccttggagtgttgatgttgctgatgaattgggaattccaaggtta |
14869329 |
T |
|
| Q |
601 |
atttgcattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagtttt |
696 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14869330 |
atttgtattagtggaagttactttgctcattctgcaatgaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcgagagtttt |
14869425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 141 - 688
Target Start/End: Complemental strand, 16909800 - 16909251
Alignment:
| Q |
141 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
238 |
Q |
| |
|
||||||||||| | | |||| ||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
|
| Q |
239 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
|
| Q |
339 |
aatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgcc |
438 |
Q |
| |
|
||||||| |||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || |
|
|
| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgct |
16909501 |
T |
|
| Q |
439 |
gacactcctaatgagatacgttcgaaaatctatcagggactcatcattctccaagagcaattcaaacaacaattccgtgacatgaaacctgatttcatag |
538 |
Q |
| |
|
||||||||||| || ||| ||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
16909500 |
gacactcctaaagacataatttccaaaatctatcagggacttgccattctccaagagcaattcacacaactatttcgtgacatgaaacctgatttcatag |
16909401 |
T |
|
| Q |
539 |
tcactgacatgttctatccttggagtgttgatattgctgatgaattgggaattccaaggttaatttgcattagtggaagttactttgctcattctgcaat |
638 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
16909400 |
tcactgacatgttttatccttggagtgttgatgttgctgatgaattgggaattccaaggttgatttgtattggtggaagttactttgctcattctgcaat |
16909301 |
T |
|
| Q |
639 |
gaactctattgaacacttctcacctcaggcgaaagttaaattgaatagcg |
688 |
Q |
| |
|
||||||||||||||| || |||||| || |||||||||| |||||||| |
|
|
| T |
16909300 |
gaactctattgaacaatttgaacctcatgccaaagttaaatcgaatagcg |
16909251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
256 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
308 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University