View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_11 (Length: 463)

Name: NF14142_low_11
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_11
NF14142_low_11
[»] chr2 (4 HSPs)
chr2 (20-463)||(41484267-41484710)
chr2 (20-447)||(40751532-40751959)
chr2 (21-453)||(41477271-41477703)
chr2 (21-450)||(41470392-41470815)
[»] chr4 (3 HSPs)
chr4 (25-453)||(16408012-16408440)
chr4 (208-341)||(52481057-52481190)
chr4 (24-175)||(52481190-52481341)


Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Complemental strand, 41484710 - 41484267
Alignment:
Q  20 gaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41484710 gaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccc 41484611  T
Q  120 tctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctggaaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41484610 tctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctggaaag 41484511  T
Q  220 ctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctg 319  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41484510 ctccttttagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctg 41484411  T
Q  320 caacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttctt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41484410 caacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttctt 41484311  T
Q  420 ttgccaagtacatcattttttcatcagccctttgcttctcctct 463  Q
     |||||||||||||||||||||||||||| |||| | |||||||    
T  41484310 ctgccaagtacatcattttttcatcagccttttgttgctcctct 41484267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 40751959 - 40751532
Alignment:
Q  20 gaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccc 119  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||   |    
T  40751959 gaagatacatacacttattaactttttgcgggcatcttgcaattcgtcattagttttgcgttcctgaacaaccagtgtttgttgaagatcttccacgttc 40751860  T
Q  120 tctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctggaaag 219  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  40751859 tccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctggatcagtctctccaatgtgattcattacctggaaag 40751760  T
Q  220 ctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctg 319  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40751759 ctcctttcagctgttctatctccaattccaatgcttgttttgcatccagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctttctg 40751660  T
Q  320 caacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttctt 419  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||| | |||||||||||||||    
T  40751659 caacatccaaccaaaagagtcctcaaaacctaagtatatacatgaaactgaattaaaaactgtcgataataggaaaatgaaatgcgtgccttatgttctt 40751560  T
Q  420 ttgccaagtacatcattttttcatcagc 447  Q
      ||||| ||||||||||||||||||||    
T  40751559 ccgccaaatacatcattttttcatcagc 40751532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 453
Target Start/End: Complemental strand, 41477703 - 41477271
Alignment:
Q  21 aagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccct 120  Q
    ||||||||||||  ||| || |||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| || |    
T  41477703 aagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccacgcctt 41477604  T
Q  121 ctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctggaaagc 220  Q
    | ||||||||||| |||||||||||||||||| ||||| | |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  41477603 ccaattcctcttctttttcctgcagctccattttgatttcctccagttttttcttctcttctagatcagtctctccaatgtgattcattacctggaaagc 41477504  T
Q  221 tcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgc 320  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41477503 tcctttcagccgttctatctccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctttctgc 41477404  T
Q  321 aacatccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttcttt 420  Q
    |||||||||||||||||||||| |||||| ||||||||| |||  ||||||||||||||||||| ||| |||||| |||||    ||||||||||||||     
T  41477403 aacatccaaccaaaagagtcctcaaaactgaagtatataaatgttactgaattaaaaactgtagataaaaggaaagtgaaatacttgccttatgttcttc 41477304  T
Q  421 tgccaagtacatcattttttcatcagccctttg 453  Q
     |||||  |||||||||||||||||||| ||||    
T  41477303 agccaaagacatcattttttcatcagccttttg 41477271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 450
Target Start/End: Complemental strand, 41470815 - 41470392
Alignment:
Q  21 aagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccct 120  Q
    ||||||||||||  ||| || |||||||||||||||||||| |||||||||||||||||||| ||||| || |||| ||||||| ||| |  ||| ||||    
T  41470815 aagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgcttgttgaggatgtatcacgccct 41470716  T
Q  121 ctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctggaaagc 220  Q
    | |||||||||| |||||  |||||||||||| ||||||| |||||||||||| |||| |||| ||||||||||| ||||||| |||||||||||| |||    
T  41470715 ccaattcctctttctttttatgcagctccattttgattgcctccaattttttcatctcttctagatcagtctctcgaatgtgactcattacctggagagc 41470616  T
Q  221 tcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgc 320  Q
    |||||||||||||||      |||||||||||  ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41470615 tcctttcagccgttc------caattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgc 41470522  T
Q  321 aacatccaaccaaaagagtccttaaaacttaagtat-atacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttctt 419  Q
    | ||||||||||||||||| || ||||||||||| | ||||||  ||||||| |||| ||||||| ||| ||||||| |||| |||||||||||| ||||    
T  41470521 atcatccaaccaaaagagttctcaaaacttaagtttgatacat-taactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctctt 41470423  T
Q  420 ttgccaagtacatcattttttcatcagccct 450  Q
      ||||| ||||||||||||||||| |||||    
T  41470422 cggccaaatacatcattttttcatcggccct 41470392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 453
Target Start/End: Original strand, 16408012 - 16408440
Alignment:
Q  25 tacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccctctaa 124  Q
    ||||||||  |||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||    
T  16408012 tacatacacttattaattttttgcgagcatcttgcaactcgtcattagttttgcgctcttgaacaacaagtgtttgttgaagatcttccacaccctccaa 16408111  T
Q  125 ttcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctggaaagctcct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||    
T  16408112 ttcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatttcgatcagtctctccaatgtgattcattacctggaaagctcct 16408211  T
Q  225 ttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcaaca 324  Q
     | |||||||| |  ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16408212 cttagccgttcaacttccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcaaca 16408311  T
Q  325 tccaaccaaaagagtccttaaaacttaagtatatacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttcttttgcc 424  Q
    | ||||||||| |||||| ||||||| |||  | ||||| ||||||||||||||||  || ||| || |||||||||  ||||||||||| ||||  ||     
T  16408312 tacaaccaaaatagtcctcaaaacttgagtggacacatgtaactgaattaaaaactcgagataaaagaaaaatgaaatctgtgccttatggtcttcagct 16408411  T
Q  425 aagtacatcattttttcatcagccctttg 453  Q
    ||   ||||||||||||||| ||| ||||    
T  16408412 aaacgcatcattttttcatcggccttttg 16408440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 208 - 341
Target Start/End: Complemental strand, 52481190 - 52481057
Alignment:
Q  208 ttacctggaaagctcctttcagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctc 307  Q
    |||||| ||||||| || ||| | |||| || |||||||||||||| ||||| |||||||| |||||||  |||||||| ||||||||||||||||||||    
T  52481190 ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 52481091  T
Q  308 tttttctttctgcaacatccaaccaaaagagtcc 341  Q
     |||||||||||||||||||||||||||||||||    
T  52481090 cttttctttctgcaacatccaaccaaaagagtcc 52481057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 52481341 - 52481190
Alignment:
Q  24 atacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccacaccctcta 123  Q
    |||||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||| || || |||||| |||||||||| ||||   | |  |    
T  52481341 atacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttgaagatcatccatgtcttgaa 52481242  T
Q  124 attcctcttccttttcctgcagctccattctgattgcttccaattttttctt 175  Q
       ||||||| ||||||||||||||||||  |||||| |||| |||||||||    
T  52481241 ggccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 52481190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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