View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_12 (Length: 460)
Name: NF14142_low_12
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 364
Target Start/End: Original strand, 13289394 - 13289754
Alignment:
| Q |
3 |
ttttagtattgactttcaaattcttgatacacttgctttgatttactctctatgcataatacatttgtatattagcaaatagtatagtaggcaatgtttg |
102 |
Q |
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| T |
13289394 |
ttttagtattgactttcaaattcttgatacacttgctttgatttactctctatgcataatacatttgtatattagcgaatagtatagtaggcaatgtttg |
13289493 |
T |
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| Q |
103 |
tttcctaagtattaaattcactatctaaaatcatgaagtagatgtttatcttgttttatcgggctaaagactatgagtcnnnnnnntggggctaat-aag |
201 |
Q |
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| T |
13289494 |
tttcctaagtattaaattcactatctaaaatcatgaagtagatgtttatcttgttttatcgggctaaagactatgagtcaaaaaaatggggctaataaag |
13289593 |
T |
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| Q |
202 |
accaaggtaacacctcaattatcgaaaacattgtatcttttaatattataaaatgaacatggaatagtagtgtttnnnnnnntagaagtaatctagatta |
301 |
Q |
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| T |
13289594 |
accaaggtaacacctcaattatcgaaaacattgtatcttttaatattataaaatgaacatggaatagtagtgtatcaaaaaataaaaggaatctagatta |
13289693 |
T |
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| Q |
302 |
gccaagatcgaattaagtcatatggacatgcagcagcgttaaaacacataatagtagtgtttc |
364 |
Q |
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| T |
13289694 |
gccaagatcgaattaaatc--atggacatgcaacagcgttaaaacacataatagtagtgtttc |
13289754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 13289769 - 13289828
Alignment:
| Q |
383 |
gaatttaaattaactaaggttctgggttcgaatccagtattgggtttgcagccaatttag |
442 |
Q |
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| T |
13289769 |
gaatttagattaactaaggttctggattcgaatccagtcttgaatttgcagccaatttag |
13289828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 13289883 - 13289942
Alignment:
| Q |
383 |
gaatttaaattaactaaggttctgggttcgaatccagtattgggtttgcagccaatttag |
442 |
Q |
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| T |
13289883 |
gaatttagattaactaaggttctggattcgaatccagtcttgaatttgcagccaatttag |
13289942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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