View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_14 (Length: 442)

Name: NF14142_low_14
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_14
NF14142_low_14
[»] chr4 (11 HSPs)
chr4 (76-296)||(3966913-3967132)
chr4 (124-292)||(3823666-3823833)
chr4 (385-430)||(7053959-7054004)
chr4 (316-356)||(43593848-43593888)
chr4 (316-352)||(50377342-50377378)
chr4 (329-359)||(13022599-13022629)
chr4 (316-358)||(13757151-13757193)
chr4 (323-356)||(9296849-9296882)
chr4 (323-356)||(42563599-42563632)
chr4 (323-356)||(52374279-52374312)
chr4 (320-356)||(18811329-18811365)
[»] chr8 (9 HSPs)
chr8 (320-430)||(8213438-8213548)
chr8 (329-430)||(9291097-9291198)
chr8 (317-358)||(21349415-21349456)
chr8 (324-361)||(22643653-22643690)
chr8 (324-361)||(22643689-22643726)
chr8 (323-356)||(44967468-44967501)
chr8 (316-356)||(8223746-8223786)
chr8 (316-356)||(16047108-16047148)
chr8 (317-357)||(23120539-23120579)
[»] chr3 (10 HSPs)
chr3 (323-430)||(51425290-51425397)
chr3 (316-356)||(9767934-9767974)
chr3 (316-376)||(53157295-53157355)
chr3 (316-356)||(11028087-11028127)
chr3 (316-356)||(15212753-15212793)
chr3 (316-356)||(15251972-15252012)
chr3 (316-352)||(41935248-41935284)
chr3 (316-356)||(46124044-46124084)
chr3 (316-359)||(18740866-18740909)
chr3 (316-356)||(6079881-6079921)
[»] chr2 (9 HSPs)
chr2 (330-430)||(38981455-38981555)
chr2 (316-356)||(2707137-2707177)
chr2 (316-356)||(24079511-24079551)
chr2 (316-356)||(31898587-31898627)
chr2 (333-384)||(23459204-23459255)
chr2 (317-356)||(25417097-25417136)
chr2 (324-361)||(25330896-25330933)
chr2 (303-356)||(45073807-45073860)
chr2 (329-357)||(44481339-44481367)
[»] scaffold0320 (1 HSPs)
scaffold0320 (316-430)||(14132-14248)
[»] chr6 (21 HSPs)
chr6 (324-430)||(13718198-13718304)
chr6 (316-356)||(15907095-15907135)
chr6 (316-356)||(21393428-21393468)
chr6 (316-356)||(23160781-23160821)
chr6 (316-356)||(7456858-7456898)
chr6 (316-356)||(8848096-8848136)
chr6 (316-356)||(19382999-19383039)
chr6 (316-356)||(21683187-21683227)
chr6 (316-366)||(2666136-2666186)
chr6 (316-358)||(18801474-18801516)
chr6 (318-356)||(23094610-23094648)
chr6 (322-356)||(31569330-31569364)
chr6 (316-361)||(19002764-19002809)
chr6 (316-356)||(17102636-17102676)
chr6 (316-356)||(17724582-17724622)
chr6 (317-361)||(18175928-18175972)
chr6 (316-356)||(19214797-19214837)
chr6 (316-356)||(20882000-20882040)
chr6 (324-356)||(22291703-22291735)
chr6 (316-356)||(31877215-31877255)
chr6 (316-356)||(32616914-32616954)
[»] scaffold0072 (1 HSPs)
scaffold0072 (316-373)||(46300-46357)
[»] chr7 (5 HSPs)
chr7 (315-356)||(3568525-3568566)
chr7 (316-356)||(18535678-18535719)
chr7 (320-352)||(1966329-1966361)
chr7 (316-356)||(13796591-13796631)
chr7 (316-348)||(39703135-39703167)
[»] chr5 (7 HSPs)
chr5 (316-361)||(27032678-27032723)
chr5 (316-361)||(22362573-22362618)
chr5 (316-352)||(21112727-21112763)
chr5 (316-356)||(38925453-38925493)
chr5 (316-356)||(42883075-42883115)
chr5 (323-356)||(35328833-35328866)
chr5 (317-361)||(12563061-12563105)
[»] scaffold0077 (1 HSPs)
scaffold0077 (316-356)||(52540-52580)
[»] chr1 (7 HSPs)
chr1 (316-356)||(15723293-15723333)
chr1 (316-356)||(44201674-44201714)
chr1 (317-356)||(2248059-2248098)
chr1 (317-356)||(25614001-25614040)
chr1 (316-351)||(42958706-42958741)
chr1 (313-356)||(46351903-46351946)
chr1 (316-356)||(19193809-19193849)
[»] scaffold0590 (1 HSPs)
scaffold0590 (320-356)||(8958-8994)
[»] scaffold0337 (1 HSPs)
scaffold0337 (316-356)||(791-831)
[»] scaffold0281 (1 HSPs)
scaffold0281 (318-356)||(4589-4627)
[»] scaffold0003 (1 HSPs)
scaffold0003 (316-358)||(163151-163193)
[»] scaffold0283 (1 HSPs)
scaffold0283 (323-356)||(13602-13635)
[»] scaffold0039 (1 HSPs)
scaffold0039 (316-353)||(102248-102285)
[»] scaffold0557 (1 HSPs)
scaffold0557 (316-356)||(6451-6491)
[»] scaffold0553 (1 HSPs)
scaffold0553 (316-356)||(6565-6605)
[»] scaffold0214 (1 HSPs)
scaffold0214 (316-356)||(29235-29275)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 76 - 296
Target Start/End: Complemental strand, 3967132 - 3966913
Alignment:
Q  76 ccccttataattgtacatagttcaatcaaatcttgatcttccatgatagtaaactagttaccaccaacatgaatcttgacagtattctccaagggtagag 175  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  3967132 ccccttataattgaacataattcaaccaaatcttgatcttccatgattgtaaactagctaccaccaacattaatcttgacagtattctccaagggtagag 3967033  T
Q  176 cagaagaaggacatctacaccatgaattggttgaagaatgtgtcgagtaagaaaattgtgtttctagcatttctcttattttaaaaacttatataatgat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  3967032 cagaagaaggacatctacaccatgaattggttgaagaatgtgtcgagtaagaaaattgtgttgctagcatttctcttattttaaaaacttatataatga- 3966934  T
Q  276 ttatataattattttaacatt 296  Q
    ||||| |||||||||||||||    
T  3966933 ttatacaattattttaacatt 3966913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 3823666 - 3823833
Alignment:
Q  124 gtaaactagttaccaccaacatgaatcttgacagtattctccaagggtagagcagaagaaggacatctacaccatgaattggttgaagaatgtgtcgagt 223  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| || ||||||||||||||||||    
T  3823666 gtaaactagcttccaccaacataaatcttgacagtattctccaaaggtagaatagaagaaggacatctacaccatgaactgattgaagaatgtgtcgagt 3823765  T
Q  224 aagaaaattgtgtttctagcatttctcttattttaaaaacttatataatgatttatataattattttaa 292  Q
    || ||||||| ||| |||||| || ||||||||| ||||||| |||| ||| ||||| |||||||||||    
T  3823766 aaaaaaattgggttgctagcaattatcttattttgaaaacttgtatagtga-ttatacaattattttaa 3823833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 7053959 - 7054004
Alignment:
Q  385 gtgaaaatattggttttgttttaagtttgcatgtaatttatatatt 430  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  7053959 gtgaaaatattgtttttgttttaagtttgcatgtaatttatatatt 7054004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 43593888 - 43593848
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  43593888 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 43593848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 50377342 - 50377378
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcg 352  Q
    |||||||||||| ||||||||||||||||||||||||    
T  50377342 gcactcccgtgcccgtctgtccgctctttctactgcg 50377378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 359
Target Start/End: Complemental strand, 13022629 - 13022599
Alignment:
Q  329 cgtctgtccgctctttctactgcgctaatgt 359  Q
    |||||||||||||||||||||||||||||||    
T  13022629 cgtctgtccgctctttctactgcgctaatgt 13022599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 13757151 - 13757193
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatg 358  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||    
T  13757151 gcactcccgtgcccgtctgttcgctctttctactgcactaatg 13757193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 9296882 - 9296849
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| ||||||||||||||||||||||||||||    
T  9296882 cgtgcccgtctgtccgctctttctactgcgctaa 9296849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 42563599 - 42563632
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||||||||| |||||||||||||||    
T  42563599 cgtgctcgtctgtccgctttttctactgcgctaa 42563632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 52374279 - 52374312
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| ||||||||||||||||||||||||||||    
T  52374279 cgtgcccgtctgtccgctctttctactgcgctaa 52374312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 18811365 - 18811329
Alignment:
Q  320 tcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  18811365 tcccgtgcccgtctgtccactctttctactgcgctaa 18811329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 320 - 430
Target Start/End: Complemental strand, 8213548 - 8213438
Alignment:
Q  320 tcccgtgctcgtctgtccgctctttctactgcgctaatgtgtttatagacttgactatatttcttgtgaaaatattggttttgttttaagtttgcatgta 419  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8213548 tcccgtgcccgtctgtccgctctttctactgcgctaatgtgtttatagacttgactatgtttcttgtgaaaatattggttttgttttaagtttgcatgta 8213449  T
Q  420 atttatatatt 430  Q
    |||||||||||    
T  8213448 atttatatatt 8213438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 9291198 - 9291097
Alignment:
Q  329 cgtctgtccgctctttctactgcgctaatgtgtttatagacttgactatatttcttgtgaaaatattggttttgttttaagtttgcatgtaatttatata 428  Q
    |||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9291198 cgtctgtccgctctttctactgcgctaatgtgtttatagatttgtatatgtttcttgtgaaaatattgattttgttttaagtttgcatgtaatttatata 9291099  T
Q  429 tt 430  Q
    ||    
T  9291098 tt 9291097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 21349415 - 21349456
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaatg 358  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  21349415 cactcccgtgcccgtctgtccgctctttctactgcgctaatg 21349456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 22643653 - 22643690
Alignment:
Q  324 gtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  22643653 gtgcccgtctgtccactctttctactgcgctaatgtgt 22643690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 22643689 - 22643726
Alignment:
Q  324 gtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  22643689 gtgcccgtctgtccgctctttctactgcgctaacgtgt 22643726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 44967468 - 44967501
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| ||||||||||||||||||||||||||||    
T  44967468 cgtgcccgtctgtccgctctttctactgcgctaa 44967501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 8223746 - 8223786
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| | ||||||||||||||||||||| ||||    
T  8223746 gcactcccgtgcccttctgtccgctctttctactgcactaa 8223786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 16047148 - 16047108
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| ||||||  |||||||||||||||||||||||||||    
T  16047148 gcacttccgtgcctgtctgtccgctctttctactgcgctaa 16047108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 23120539 - 23120579
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaat 357  Q
    ||||||||||| | |||||||||| ||||||||||||||||    
T  23120539 cactcccgtgcccatctgtccgctttttctactgcgctaat 23120579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 323 - 430
Target Start/End: Complemental strand, 51425397 - 51425290
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaatgtgtttatagacttgactatatttcttgtgaaaatattggttttgttttaagtttgcatgtaatt 422  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  51425397 cgtgcccgtctgtccgctctttctactgtgctaatgtgtttatagacttgactatatttcttgttaaaatattgattttgttttaagtttgcatgtaatt 51425298  T
Q  423 tatatatt 430  Q
    ||||||||    
T  51425297 tatatatt 51425290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 9767974 - 9767934
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  9767974 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 9767934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 53157295 - 53157355
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgtttatagacttgacta 376  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| | |||| |||| ||||    
T  53157295 gcactctcgtgcccgtctgtccgctctttctactgcgctaatgtatctatatactttacta 53157355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 11028087 - 11028127
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  11028087 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 11028127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 15212753 - 15212793
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  15212753 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 15212793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 15251972 - 15252012
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  15251972 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 15252012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 41935284 - 41935248
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcg 352  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41935284 gcactcccgtgcccgtctgtccgctctttctactgcg 41935248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 46124044 - 46124084
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  46124044 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 46124084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 18740909 - 18740866
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgt 359  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||    
T  18740909 gcacttccgtgcgcgtctgtccgctctttctaatgcgctaatgt 18740866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 6079921 - 6079881
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| |||||| |||||||||||| |||||||||||||||    
T  6079921 gcacttccgtgcccgtctgtccgctttttctactgcgctaa 6079881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 38981555 - 38981455
Alignment:
Q  330 gtctgtccgctctttctactgcgctaatgtgtttatagacttgactatatttcttgtgaaaatattggttttgttttaagtttgcatgtaatttatatat 429  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38981555 gtctgtccgctctttctattgcgctaacgtgtttatagacttgactatgtttcttgtgaaaatattggttttgttttaagtttgcatgtaatttatatat 38981456  T
Q  430 t 430  Q
    |    
T  38981455 t 38981455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 2707177 - 2707137
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  2707177 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 2707137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 24079551 - 24079511
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  24079551 gcactcccgtgtccgtctgtccgctctttctactgcgctaa 24079511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 31898627 - 31898587
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  31898627 gcactcccgtgcccgtctatccgctctttctactgcgctaa 31898587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 23459204 - 23459255
Alignment:
Q  333 tgtccgctctttctactgcgctaatgtgtttatagacttgactatatttctt 384  Q
    |||||||||||||||||||||||| || | |||| |||||||||| ||||||    
T  23459204 tgtccgctctttctactgcgctaacgtatgtatatacttgactatgtttctt 23459255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 25417097 - 25417136
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  25417097 cactcctgtgcccgtctgtccgctctttctactgcgctaa 25417136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 25330896 - 25330933
Alignment:
Q  324 gtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  25330896 gtgcccgtctgtccgctttttctactgcgctaatgtgt 25330933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 45073807 - 45073860
Alignment:
Q  303 tactagcgtccgagcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||   ||||||||||| |||||||||||| |||| ||||||||||    
T  45073807 tactagcgtccagacactcccgtgcccgtctgtccgctttttccactgcgctaa 45073860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 357
Target Start/End: Original strand, 44481339 - 44481367
Alignment:
Q  329 cgtctgtccgctctttctactgcgctaat 357  Q
    |||||||||||||||||||||||||||||    
T  44481339 cgtctgtccgctctttctactgcgctaat 44481367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 316 - 430
Target Start/End: Complemental strand, 14248 - 14132
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgtttatagacttgactatat--ttcttgtgaaaatattggttttgttttaagtttg 413  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||||||    
T  14248 gcactctcgtgcccgtctgtccgctctttctactacgctaatgtgtttatagacttgacaatatgtttcatgtgaaaatattggttttgttttaagtttg 14149  T
Q  414 catgtaatttatatatt 430  Q
    |||||||||||||||||    
T  14148 catgtaatttatatatt 14132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 324 - 430
Target Start/End: Complemental strand, 13718304 - 13718198
Alignment:
Q  324 gtgctcgtctgtccgctctttctactgcgctaatgtgtttatagacttgactatatttcttgtgaaaatattggttttgttttaagtttgcatgtaattt 423  Q
    |||| |||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||    
T  13718304 gtgcccgtctgtccgttttttctactgcgctaatgtgtgtatagacttgactatgtttcttgtgaaaatatttgttttgtttcaagtttgcatgtaattt 13718205  T
Q  424 atatatt 430  Q
    |||||||    
T  13718204 atatatt 13718198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 15907135 - 15907095
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  15907135 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 15907095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 21393468 - 21393428
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  21393468 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 21393428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 23160821 - 23160781
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  23160821 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 23160781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 7456858 - 7456898
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  7456858 gcactcccctgctcgtctgttcgctctttctactgcgctaa 7456898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 8848096 - 8848136
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  8848096 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 8848136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 19383039 - 19382999
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  19383039 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 19382999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 21683187 - 21683227
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  21683187 gcactcccgtgcccgtctgtccgctctttctattgcgctaa 21683227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 2666186 - 2666136
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgtttata 366  Q
    |||||||||||| |||||||||| | ||||||||||||||| || ||||||    
T  2666186 gcactcccgtgcccgtctgtccgttttttctactgcgctaacgtatttata 2666136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 18801516 - 18801474
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatg 358  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||    
T  18801516 gcactcccgtgcccgtctgttcgctctttctactacgctaatg 18801474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 23094648 - 23094610
Alignment:
Q  318 actcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  23094648 actcccgttcccgtctgtccgctctttctactgcgctaa 23094610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 31569330 - 31569364
Alignment:
Q  322 ccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||| ||||||||||||||||||||||||||||    
T  31569330 ccgtgcccgtctgtccgctctttctactgcgctaa 31569364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 19002809 - 19002764
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||||||||| | |||||||||||| ||||||| ||||||||||||    
T  19002809 gcactcccgtacccgtctgtccgctttttctaccgcgctaatgtgt 19002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 17102676 - 17102636
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  17102676 gcactcccatgcccatctgtccgctctttctactgcgctaa 17102636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 17724622 - 17724582
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||| ||| |||||||||||| |||||||||||||||    
T  17724622 gcactcccatgcccgtctgtccgctttttctactgcgctaa 17724582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 18175928 - 18175972
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    ||||| ||||| ||||||||||||||||||||| |||||| ||||    
T  18175928 cactctcgtgcccgtctgtccgctctttctactacgctaacgtgt 18175972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 19214797 - 19214837
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| ||||||| |||||||    
T  19214797 gcactcccgtgcccgtctgtccgctttttctaccgcgctaa 19214837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 20882040 - 20882000
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||||  |||||||||||||||||| ||||||||    
T  20882040 gcactcccgtgcctgtctgtccgctctttctattgcgctaa 20882000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 22291735 - 22291703
Alignment:
Q  324 gtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||| ||||||||||||||||||||||||||||    
T  22291735 gtgcccgtctgtccgctctttctactgcgctaa 22291703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 31877255 - 31877215
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||   ||||||||||||||||||||||||||||    
T  31877255 gcactcccgtatccgtctgtccgctctttctactgcgctaa 31877215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 32616914 - 32616954
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  32616914 gcactcccgtgcccgtctgtccgctttttctactacgctaa 32616954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 46300 - 46357
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgtttatagacttga 373  Q
    |||||||||||| |||||||||||| ||||||||||||||| || |||||| ||||||    
T  46300 gcactcccgtgcccgtctgtccgctttttctactgcgctaacgtatttatatacttga 46357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 3568525 - 3568566
Alignment:
Q  315 agcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  3568525 agcactcccgtgcccgtctgtccgctctttctactgcgctaa 3568566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 18535678 - 18535719
Alignment:
Q  316 gcactcccgtgctcg-tctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  18535678 gcactcccgtgcccggtctgtccgctctttctactgcgctaa 18535719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 1966329 - 1966361
Alignment:
Q  320 tcccgtgctcgtctgtccgctctttctactgcg 352  Q
    |||||||| ||||||||||||||||||||||||    
T  1966329 tcccgtgcccgtctgtccgctctttctactgcg 1966361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 13796631 - 13796591
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||| ||||| ||||||||||||||||||| ||||||||    
T  13796631 gcactctcgtgcacgtctgtccgctctttctattgcgctaa 13796591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 39703167 - 39703135
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctac 348  Q
    |||||||||||| ||||||||||||||||||||    
T  39703167 gcactcccgtgcccgtctgtccgctctttctac 39703135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 27032723 - 27032678
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||    
T  27032723 gcactcccgtgcccgtctgtccgctctttctactgcgctaacgtgt 27032678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 22362573 - 22362618
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||    
T  22362573 gcactcccgtgcccgtctgtccgctttttctactgcgctaacgtgt 22362618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 21112727 - 21112763
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcg 352  Q
    |||||||||||| ||||||||||||||||||||||||    
T  21112727 gcactcccgtgcccgtctgtccgctctttctactgcg 21112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 38925453 - 38925493
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  38925453 gcactcccgtgcccgtctgtccgctctttctactacgctaa 38925493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 42883115 - 42883075
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  42883115 gcactcccgtgcccgtctgtccgctctttttactgcgctaa 42883075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 35328833 - 35328866
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| ||||||||||||||||||||||||||||    
T  35328833 cgtgcccgtctgtccgctctttctactgcgctaa 35328866  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 12563105 - 12563061
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaatgtgt 361  Q
    |||||| ||||||||||||||| | ||||||||||||| ||||||    
T  12563105 cactcctgtgctcgtctgtccgttttttctactgcgctgatgtgt 12563061  T

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Target: scaffold0077 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 52580 - 52540
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  52580 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 52540  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 15723333 - 15723293
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  15723333 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 15723293  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 44201714 - 44201674
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44201714 gcactcccgtgcccgtctgtccgctctttctactgcgctaa 44201674  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 2248059 - 2248098
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  2248059 cactcccgtgtccgtctgtccgctctttctactgcgctaa 2248098  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Complemental strand, 25614040 - 25614001
Alignment:
Q  317 cactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  25614040 cactcccgtgcccgtctgtctgctctttctactgcgctaa 25614001  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 351
Target Start/End: Complemental strand, 42958741 - 42958706
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgc 351  Q
    |||||||||||| |||||||||||||||||||||||    
T  42958741 gcactcccgtgcccgtctgtccgctctttctactgc 42958706  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 46351903 - 46351946
Alignment:
Q  313 cgagcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||    
T  46351903 cgagcactcccgtgcccatctgtccgctctttctattgcgctaa 46351946  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 19193849 - 19193809
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  19193849 gcactcctgtgcctgtctgtccgctctttctactgcgctaa 19193809  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 8958 - 8994
Alignment:
Q  320 tcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8958 tcccgtgcccgtctgtccgctctttctactgcgctaa 8994  T

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Target: scaffold0337 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 831 - 791
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  831 gcactcccgtgcccgtctgtccgctttttctactgcgctaa 791  T

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Target: scaffold0281 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 4627 - 4589
Alignment:
Q  318 actcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  4627 actcccgtgcccgtctgtccactctttctactgcgctaa 4589  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 163151 - 163193
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaatg 358  Q
    |||||||||| | | ||||||||||||||||||||||||||||    
T  163151 gcactcccgtacccatctgtccgctctttctactgcgctaatg 163193  T

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Target: scaffold0283 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 13602 - 13635
Alignment:
Q  323 cgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||| ||||||||||||||||||||||||||||    
T  13602 cgtgcccgtctgtccgctctttctactgcgctaa 13635  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 102248 - 102285
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgc 353  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  102248 gcactcccgtgcccgtttgtccgctctttctactgcgc 102285  T

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Target: scaffold0557 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 6451 - 6491
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    ||||||||||||  |||||||||||||||||| ||||||||    
T  6451 gcactcccgtgcctgtctgtccgctctttctattgcgctaa 6491  T

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Target: scaffold0553 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 6565 - 6605
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||| | |||||||||||| |||||||||||||||    
T  6565 gcactcccgtacccgtctgtccgctttttctactgcgctaa 6605  T

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Target: scaffold0214 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 29275 - 29235
Alignment:
Q  316 gcactcccgtgctcgtctgtccgctctttctactgcgctaa 356  Q
    |||||||||||  |||||||||||||||||||| |||||||    
T  29275 gcactcccgtgtccgtctgtccgctctttctaccgcgctaa 29235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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