View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_15 (Length: 437)
Name: NF14142_low_15
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 12769299 - 12769702
Alignment:
| Q |
1 |
caactctcttctaaataaactagggattatatagtgattaaaatgtagcaatttagaatgcaacaatttggaaaattagggaagttccaagggaggttat |
100 |
Q |
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| T |
12769299 |
caactctcttctaaataaactagggattatatagtgattaaaatgtagcaatttagaatgcaacaatttggaaaattagggaagttctaagggaggttat |
12769398 |
T |
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| Q |
101 |
tttttcttccaaaatttaggaggggggagattgcagcctcctcgagatggtttattgctagaaaattaggggaatttttatttgtatttcgaatggttct |
200 |
Q |
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| T |
12769399 |
tttttcttccgaaatttaggaggggggagattgccgcctcctcgag----tttattgctagaaaattaggggaatctttatttgtattttgaatggttct |
12769494 |
T |
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| Q |
201 |
cgaaccctcttctttgtcttagttcttgatgtatgtaaggtgtttatttttgttggacgagtacctcttataatctttccgatttgtaggttaagtacag |
300 |
Q |
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| T |
12769495 |
cgaaccctcttctttgtcttagttcttgatgtatgtaaggtgtttatttttgttggacgagtatctcttataatctttccgatttgtaggttaagaacag |
12769594 |
T |
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| Q |
301 |
tttgtacttctctcgttatttaataaattttgttggtaaaaaataggtttgaaatgtatggttagttaattattgaccttcagattagagatatatatgc |
400 |
Q |
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| T |
12769595 |
tttgtacttctctagttatttaataaattttgatgctaaaaaatatgtttaaaatgtatggttagttaattattaacctttagattagagatatatatgc |
12769694 |
T |
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| Q |
401 |
cacaggtt |
408 |
Q |
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| T |
12769695 |
cacaggtt |
12769702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 7234273 - 7234329
Alignment:
| Q |
276 |
tttccgatttgtaggttaagtacagtttgtacttctctcgttatttaataaattttg |
332 |
Q |
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| T |
7234273 |
tttccaatttgtgggttaagtacactttgtaattctctcgttatgtatgaaattttg |
7234329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 29566685 - 29566607
Alignment:
| Q |
144 |
gagatggtttattgctagaaaa-ttaggggaatttttatttgtatttcgaatggttctcgaaccctcttctttgtctta |
221 |
Q |
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| T |
29566685 |
gagatggtttattgctaaaaaaattagggggatccttgtttgtattacgaatgattttcgaaccctctactttatctta |
29566607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 31365870 - 31365785
Alignment:
| Q |
258 |
cgagtacctcttataatctttccgatttgtaggttaagtacagtttgtacttctctcgttatttaataaattttgttggtaaaaaa |
343 |
Q |
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| T |
31365870 |
cgagtacctcttatattattcccgaattgtggattaaatactctttatacttctttcattatctaataaattttgttgttaaaaaa |
31365785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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