View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_17 (Length: 412)

Name: NF14142_low_17
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_17
NF14142_low_17
[»] chr3 (10 HSPs)
chr3 (13-150)||(2458837-2458974)
chr3 (274-395)||(2458976-2459097)
chr3 (113-154)||(968233-968274)
chr3 (113-150)||(1937439-1937476)
chr3 (113-152)||(1941033-1941072)
chr3 (201-243)||(2441643-2441685)
chr3 (113-154)||(1931612-1931653)
chr3 (112-152)||(1898131-1898171)
chr3 (112-152)||(1907577-1907617)
chr3 (109-153)||(12132615-12132659)
[»] scaffold0200 (2 HSPs)
scaffold0200 (291-370)||(1036-1115)
scaffold0200 (49-154)||(1249-1354)
[»] chr5 (7 HSPs)
chr5 (291-370)||(41973728-41973807)
chr5 (113-156)||(23754489-23754532)
chr5 (113-156)||(23774523-23774566)
chr5 (113-156)||(23819944-23819987)
chr5 (113-156)||(23861476-23861519)
chr5 (49-154)||(41973941-41974046)
chr5 (198-242)||(1428081-1428125)
[»] chr8 (1 HSPs)
chr8 (113-152)||(31144856-31144895)
[»] chr4 (1 HSPs)
chr4 (112-151)||(20020248-20020287)
[»] chr7 (1 HSPs)
chr7 (107-153)||(1078664-1078710)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 2458837 - 2458974
Alignment:
Q  13 aatatacaggtcctttcaattattatgttgaagattattatatcgttggctcttgcaacggtatcctctgtattgctggctataataaaccttcagttat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2458837 aatatacaggtcctttcaattattatgttgaagattattatatcgttggctcttgcaacggtatcatctgtattgctggctataataaaccttcagttat 2458936  T
Q  113 attgtggaatccatccattagaaaattcaaggaattgc 150  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2458937 attgtggaatccatccattagaaaattcaaggaattgc 2458974  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 274 - 395
Target Start/End: Original strand, 2458976 - 2459097
Alignment:
Q  274 agagtgttgagaaaattgaagtaaagattcatattttgggtactggtttctggagaagcattcaagagttcccttttggcggtgtccctgttgagcaatc 373  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2458976 agagtgttgacaaaattgaagtaaagattcatattttgggtactggtttctggagaagcattcaagagttcccttttggcggtgtccctgttgagcaatc 2459075  T
Q  374 agggcattttgtgagtggcaag 395  Q
    ||||||||||||||||||||||    
T  2459076 agggcattttgtgagtggcaag 2459097  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 968233 - 968274
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgccccc 154  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  968233 attgtggaatccttccattagaaaattcaaagaattgccccc 968274  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 1937476 - 1937439
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgc 150  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1937476 attgtggaatccttccattagaaaattcaaggaattgc 1937439  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 1941072 - 1941033
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgccc 152  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  1941072 attgtggaacccttccattagaaaattcaaggaattgccc 1941033  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 2441643 - 2441685
Alignment:
Q  201 ggctatgattcttttacagataattacaaagtgattgttgttt 243  Q
    ||||||||||||||||  ||||||||||||||| |||||||||    
T  2441643 ggctatgattcttttaatgataattacaaagtggttgttgttt 2441685  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 1931653 - 1931612
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgccccc 154  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  1931653 attgtggaatccttccattcgaaaattcaaggaattgtcccc 1931612  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 1898171 - 1898131
Alignment:
Q  112 tattgtggaatccatccattagaaaattcaaggaattgccc 152  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  1898171 tattgtggaacccttccattcgaaaattcaaggaattgccc 1898131  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 1907617 - 1907577
Alignment:
Q  112 tattgtggaatccatccattagaaaattcaaggaattgccc 152  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  1907617 tattgtggaacccttccattcgaaaattcaaggaattgccc 1907577  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 12132615 - 12132659
Alignment:
Q  109 ttatattgtggaatccatccattagaaaattcaaggaattgcccc 153  Q
    ||||||||| ||| || |||||||||||||||||||| |||||||    
T  12132615 ttatattgttgaacccttccattagaaaattcaaggagttgcccc 12132659  T

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Target: scaffold0200 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 1115 - 1036
Alignment:
Q  291 gaagtaaagattcatattttgggtactggtttctggagaagcattcaagagttcccttttggcggtgtccctgttgagca 370  Q
    |||||| ||||||||| |||||||||   ||| |||| |||||||||||| ||||||||||| ||||||| |||||||||    
T  1115 gaagtacagattcatactttgggtaccaatttttggaaaagcattcaagaattcccttttggtggtgtccatgttgagca 1036  T

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Target: scaffold0200; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 1354 - 1249
Alignment:
Q  49 attatatcgttggctcttgcaacggtatcctctgtattgctggctataataaaccttcagttatattgtggaatccatccattagaaaattcaaggaatt 148  Q
    ||||||| |||||||||||  |||  ||||| ||| ||||||||||  |||||  ||   || |||||||||| || |||| ||||||||||||||||||    
T  1354 attatatagttggctcttgtgacgacatcctttgtcttgctggctaatataaaaattgcattctattgtggaacccttccactagaaaattcaaggaatt 1255  T
Q  149 gccccc 154  Q
    ||||||    
T  1254 gccccc 1249  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 41973807 - 41973728
Alignment:
Q  291 gaagtaaagattcatattttgggtactggtttctggagaagcattcaagagttcccttttggcggtgtccctgttgagca 370  Q
    |||||| ||||||||| |||||||||   ||| |||| |||||||||||| ||||||||||| ||||||| |||||||||    
T  41973807 gaagtacagattcatactttgggtaccaatttttggaaaagcattcaagaattcccttttggtggtgtccatgttgagca 41973728  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 23754532 - 23754489
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgcccccac 156  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  23754532 attgtggaacccttccattagaaaattcaaggaattgcccccac 23754489  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 23774566 - 23774523
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgcccccac 156  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  23774566 attgtggaacccttccattagaaaattcaaggaattgcccccac 23774523  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 23819987 - 23819944
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgcccccac 156  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  23819987 attgtggaacccttccattagaaaattcaaggaattgcccccac 23819944  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 23861519 - 23861476
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgcccccac 156  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  23861519 attgtggaacccttccattagaaaattcaaggaattgcccccac 23861476  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 41974046 - 41973941
Alignment:
Q  49 attatatcgttggctcttgcaacggtatcctctgtattgctggctataataaaccttcagttatattgtggaatccatccattagaaaattcaaggaatt 148  Q
    ||||||| |||||||||||  |||  ||||| ||| ||||||||||  |||||  ||   || |||||||||| || |||| ||||||||||||||||||    
T  41974046 attatatagttggctcttgtgacgacatcctttgtcttgctggctaatataaaaattgcattctattgtggaacccttccactagaaaattcaaggaatt 41973947  T
Q  149 gccccc 154  Q
    ||||||    
T  41973946 gccccc 41973941  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 1428125 - 1428081
Alignment:
Q  198 ttcggctatgattcttttacagataattacaaagtgattgttgtt 242  Q
    ||||||||||||| ||| || ||||||||||| ||||||||||||    
T  1428125 ttcggctatgattgtttaacggataattacaaggtgattgttgtt 1428081  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 31144895 - 31144856
Alignment:
Q  113 attgtggaatccatccattagaaaattcaaggaattgccc 152  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  31144895 attgtggaacccttccattagaaaattcaaggaattgccc 31144856  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 20020287 - 20020248
Alignment:
Q  112 tattgtggaatccatccattagaaaattcaaggaattgcc 151  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  20020287 tattgtggaacccttccattagaaaattcaaggaattgcc 20020248  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 1078710 - 1078664
Alignment:
Q  107 agttatattgtggaatccatccattagaaaattcaaggaattgcccc 153  Q
    ||||||||||| ||| || |||||||||||||||||||| |||||||    
T  1078710 agttatattgttgaacccttccattagaaaattcaaggagttgcccc 1078664  T

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