View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_18 (Length: 410)
Name: NF14142_low_18
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 8756224 - 8756615
Alignment:
| Q |
1 |
tttctgtaagacgcggcgacgactcgtgcacactcactcatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacacca |
100 |
Q |
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| T |
8756224 |
tttctgtaagacgcgacgacgactcgagcacactcactaatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaacaaagacacca |
8756323 |
T |
|
| Q |
101 |
tagatatgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtatgccaagatggtcgttccaattaaaactgcagc |
200 |
Q |
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| T |
8756324 |
tagatatgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtacgccaagatggtcgttccaattaaaactgcagc |
8756423 |
T |
|
| Q |
201 |
tgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaagaggctctt |
300 |
Q |
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| T |
8756424 |
tgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaagaggctctt |
8756523 |
T |
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| Q |
301 |
acaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgatattgtgggagagttgcagctcatattcaatgg |
392 |
Q |
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| T |
8756524 |
acaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgatattgtgggagagttgcagctcatattcaatgg |
8756615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 8748679 - 8749056
Alignment:
| Q |
7 |
taagacgcggcgacgactcgtgcacactcactcatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacaccatagata |
106 |
Q |
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| T |
8748679 |
taagacgcgacaaccactcgagcacactcactaatcacgttgccttttggttccaccttgacatagagtgaagaagctagaaagaaagataccatagata |
8748778 |
T |
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| Q |
107 |
tgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtatgccaagatggtcgttccaattaaaactgcagctgctgt |
206 |
Q |
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| T |
8748779 |
tgaacatgaacacaacaggtaaaccaaatccaacaatccaaccaaaattttcttgaatatatgccaaaatggtcgttccaattaaaactgcagctgttgc |
8748878 |
T |
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| Q |
207 |
taaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaagaggctcttacacca |
306 |
Q |
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| T |
8748879 |
taaagcataggtccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaagggtaaggaagaagctcttacacca |
8748978 |
T |
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| Q |
307 |
ccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgatattgtgggagagttgcagctcata |
384 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
8748979 |
ccagctccaatggcgattaggcatagagaagagtataagaaagcaagttgtgatgttgtcggagagttgcagctcata |
8749056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 8766243 - 8766626
Alignment:
| Q |
1 |
tttctgtaagacgcggcgacgactcgtgcacactcactcatcacattgcctttcggttcaaccttaacatagagtgaagaagctaagaagaaagacacca |
100 |
Q |
| |
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||||||||||||||| ||| ||||| ||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
8766243 |
tttctgtaagacgcgatgacaactcgagcaaactcactaatcacattgccttttggttccaccttaacatagagtgaagaacctaaaaagaaagacacca |
8766342 |
T |
|
| Q |
101 |
tagatatgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtatgccaagatggtcgttccaattaaaactgcagc |
200 |
Q |
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|||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||| |||||||| | |||| ||||| ||| |||||||| |
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| T |
8766343 |
tagatatgaacatgaacacaacaggtacaccaaatccaaccatccaaccaaaaatttcttgaatatatgccaaaacggtcattccagttaggactgcagc |
8766442 |
T |
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| Q |
201 |
tgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaagaggctctt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || || |||||| |
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| T |
8766443 |
tgctgttaaagcataggtccaattaaagtagccctctatgattcctgcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctctt |
8766542 |
T |
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| Q |
301 |
acaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgatattgtgggagagttgcagctcata |
384 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
8766543 |
acaccaccagctccaatggagattaagcatagagaagagtataagaaagcaagctgtgatgttgtgggagagttgcagctcata |
8766626 |
T |
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