View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_20 (Length: 404)
Name: NF14142_low_20
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 1585540 - 1585162
Alignment:
| Q |
13 |
aatatcatataaatggagggtagtttgtttaaggttgtgtttcttttactagtttttggtattgtaaacacattagtgtatggccaagggacacgtgtag |
112 |
Q |
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| T |
1585540 |
aatatcatataaatggagggtagtttgtttaaggttgtgtttcttttactagtttttagtattgtaaacacattagtgtatggccaagggacacgtgtag |
1585441 |
T |
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| Q |
113 |
gattctattcaagtacatgttctcaagcagaatcaattgttaaatccacagttgcttctcatgttaactctgattcttctttagctcctggtttacttag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1585440 |
gattctattcaagtacatgttctcaagcagaatcaattgttaaatccacagttgcttctcatgttaactctgattcttctttagctcctggtttacttag |
1585341 |
T |
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| Q |
213 |
gatgcactttcatgattgttttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttccaaaccttggtttaaga |
312 |
Q |
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| T |
1585340 |
gatgcactttcatgattgttttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttccaaaccttggtttaaga |
1585241 |
T |
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| Q |
313 |
ggttttgaagttattgatgatgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgctgatatcgttg |
391 |
Q |
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| T |
1585240 |
ggttttgaagttattgaggatgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgctgatatcgttg |
1585162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 233 - 387
Target Start/End: Original strand, 1591551 - 1591705
Alignment:
| Q |
233 |
ttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttccaaaccttggtttaagaggttttgaagttattgatga |
332 |
Q |
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| T |
1591551 |
ttgtccaaggttgtgacgcttctgttctcgttgccggctcaggcaccgagaaaacagcatttccaaaccttggtttaagaggttttgaagttattgagga |
1591650 |
T |
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| Q |
333 |
tgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgctgatatc |
387 |
Q |
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| T |
1591651 |
tgctaagacaaaactcgaggctgcatgtcccggtgttgtctcttgtgccgatatc |
1591705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 1591372 - 1591552
Alignment:
| Q |
25 |
atggagggtagtttgtttaaggttgtgtttcttttactagtttttggtattgtaaacacattagtgtatggccaagggacacgtgtaggattctattcaa |
124 |
Q |
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| T |
1591372 |
atggagtgtactttgcttaaggttgtgtttattttgcttgttttgggtattttgaacacattagtgcatggtcaagggacacgtgtaggattctattcaa |
1591471 |
T |
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| Q |
125 |
gtacatgttctcaagcagaatcaattgttaaatccacagttgcttctcatgttaactctgattcttctttagctcctggtt |
205 |
Q |
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| T |
1591472 |
gtacatgttctcaagcagaatcaattgttaagtccacagttacatctcatgttaactctgattcttctttggctcctggtt |
1591552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 1732941 - 1733029
Alignment:
| Q |
13 |
aatatcatataaatggagggtagtttgtttaaggttgtgtttcttttactagtttttggtattgtaaacacattagtgtatggccaagggac |
104 |
Q |
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| T |
1732941 |
aatataatataaatgaagggtagtttgtttaaggtt---tatattttacttgttttgggtattgtgaacacattagtgcatggacaagggac |
1733029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 175 - 386
Target Start/End: Original strand, 17373898 - 17374116
Alignment:
| Q |
175 |
gttaactctgattcttctttagctcctggtt---tacttaggatgcactttcat----gattgttttgtccaaggttgtgacgcttctgttctcgttgcc |
267 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||| | | ||||| ||||||||||||||||| || |||||| || ||||| |
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| T |
17373898 |
gttaactctgattcttctttggctcctggtgatctacttaggatgcacttccttccacgattgctttgtccaaggttgtgatgcatctgttgtcattgcc |
17373997 |
T |
|
| Q |
268 |
ggctcaggcaccgagaaaacagcatttccaaaccttggtttaagaggttttgaagttattgatgatgctaagacaaaactcgaggctgcatgtcccggtg |
367 |
Q |
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| T |
17373998 |
ggctcgggctccgagaaaacagcatttccaaaccttggtttaagaggttttgaagtaattgatgatgctaagacaaaactcgagactgcatgtcccggtg |
17374097 |
T |
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| Q |
368 |
ttgtctcttgtgctgatat |
386 |
Q |
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| T |
17374098 |
ttgtctcttgtgctgatat |
17374116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 17373771 - 17373896
Alignment:
| Q |
13 |
aatatcatataaatggagggtagtttgtttaaggttgtgtttcttttactagtttttggtattgtaaacacattagtgtatggccaagggacacgtgtag |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||||| |||||||| |
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| T |
17373771 |
aatataatataaatggagggtagtttgtttaaggttgtgtttcttttacttgttttgggtattgtgaacacattagtgcatggacaagggaaacgtgtag |
17373870 |
T |
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| Q |
113 |
gattctattcaagtacatgttctcaa |
138 |
Q |
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| T |
17373871 |
gattctattcaaatacatgttctcaa |
17373896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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