View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14142_low_21 (Length: 399)
Name: NF14142_low_21
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_21 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 14174294 - 14174667
Alignment:
| Q |
1 |
agcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaattggaggagaacactggtaacactggtacgatgattaaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14174294 |
agcccaacaagtggtatcagagctccggttggagcttgagagtatagtgtaaattaaatggaggagaaaactggtaacactggtacgatgattaaactca |
14174393 |
T |
|
| Q |
101 |
cttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14174394 |
cttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataa |
14174493 |
T |
|
| Q |
201 |
ggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagaca |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14174494 |
ggtgacggatgaagactggaaaaagtctcatcggaaggttgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagaca |
14174593 |
T |
|
| Q |
301 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctat |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174594 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctat |
14174667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 28611576 - 28611204
Alignment:
| Q |
1 |
agcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaattggaggagaacactggtaacactggtacgatgattaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
28611576 |
agcccaacaagtggtatcagagctccgattggagctcgagagtatagtgtaaattaaatggaggagaacactggta---------cgatgattaaactca |
28611486 |
T |
|
| Q |
101 |
cttctacaaactactccatttggaagccaaaaa-tggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagata |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28611485 |
cttctacaaactactccatttggaagccaaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacaaagccagata |
28611386 |
T |
|
| Q |
200 |
aggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagac |
299 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28611385 |
aggttacggatgaagactggaaaaagtctcatcggaaggctgttagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagac |
28611286 |
T |
|
| Q |
300 |
aaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28611285 |
aaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaacgcacaaaacaaaactttcgctattagaaag |
28611204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 12931032 - 12931403
Alignment:
| Q |
1 |
agcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaattggaggagaacactggtaacactggtacgatgattaaactca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
12931032 |
agcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaaatggaggagaaca---------ctggtacgatgattaaactca |
12931122 |
T |
|
| Q |
101 |
cttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931123 |
cttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataa |
12931222 |
T |
|
| Q |
201 |
ggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagaca |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931223 |
ggtgacggatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagaca |
12931322 |
T |
|
| Q |
301 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931323 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaag |
12931403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 376
Target Start/End: Original strand, 51303013 - 51303386
Alignment:
| Q |
3 |
cccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaattggaggagaacactggtaacactggtacgatgattaaactcact |
102 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
51303013 |
cccaacaagtggtatcggagctccagttggagctcgagattatagtgtaaattaaatggaagagaacattggtaacactggtacaatgattaaactcact |
51303112 |
T |
|
| Q |
103 |
tctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataagg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
51303113 |
tctacaaactactccatttggaagccaaaaatggaggatatactttactgcaaggatatgtatgatcctgtagaaaagggagacactaagccatataagg |
51303212 |
T |
|
| Q |
203 |
tgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattccaccatgtggccacagagacaaa |
302 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
51303213 |
tgacaaatgaagactggaaaaagtctcatcggaaggctgtcagtctcatcaggcagcgggtggatcttagtgtattccaccatgtggtcatagagacaaa |
51303312 |
T |
|
| Q |
303 |
tgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctatta |
376 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51303313 |
tgcccagactctgtggaagaacatcaaaaagatgtatcaaagaaagatcgcacaaaacaaaactttcgctatta |
51303386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 83 - 381
Target Start/End: Complemental strand, 24876720 - 24876420
Alignment:
| Q |
83 |
gtacgatgattaaactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaaggg |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| | |||| ||||||||||||||||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
24876720 |
gtacgatgattaaactcacttctagaaactacttcatttggaagtcgaaaacggaggatatactttactgcaatgatacatatgatcctgcagaaaaggg |
24876621 |
T |
|
| Q |
183 |
agacacgaagccagataaggtgacagatgaagactgg-aaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtggatcttagtgtattcca |
281 |
Q |
| |
|
||||||| |||||||||| | || ||||||||||| ||||||| | |||||||| ||| ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24876620 |
agacacggagccagataaaattacgaatgaagactggaaaaaagttttgtcggaaggttgttagtttgcttaggcagtgggtggatcttagtgtattcca |
24876521 |
T |
|
| Q |
282 |
ccatgt-ggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaa |
380 |
Q |
| |
|
|||||| || |||| |||| |||||||| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
24876520 |
ccatgtggggcacatagacgaatgcccatactccatggaagaacatcgaaaatatatatcaaagaaataccgcacaaaacaaaactttcactattagaaa |
24876421 |
T |
|
| Q |
381 |
g |
381 |
Q |
| |
|
| |
|
|
| T |
24876420 |
g |
24876420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 266
Target Start/End: Complemental strand, 38997071 - 38996901
Alignment:
| Q |
95 |
aactcacttctacaaactactccatttggaagccaaaaatggaggatatactttactacaaggatatgtatgatcctgtagaaaagggagacacgaagcc |
194 |
Q |
| |
|
||||||||||||||||||||| || || ||| | |||||| |||||||| |||| ||| |||||||||||| |||||||||||||||| || ||| | |
|
|
| T |
38997071 |
aactcacttctacaaactacttcagttaaaagtcgaaaatgaaggatataatttataacatggatatgtatgaccctgtagaaaagggaggcatgaa-ct |
38996973 |
T |
|
| Q |
195 |
agataaggtgacagatgaagactggaaaaagtctcatcggaaggctgtcagtctgattaggcagtgggtgga |
266 |
Q |
| |
|
||| || ||||| ||| || |||| |||||||||||| ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
38996972 |
agacaaagtgactgataaaaactgaaaaaagtctcataagaaggttgtcagtctggttaggcagttggtgga |
38996901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 369
Target Start/End: Complemental strand, 38994466 - 38994363
Alignment:
| Q |
266 |
atcttagtgtattccaccatgtggccacagagacaaatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaac |
365 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| | ||| |||||||| ||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38994466 |
atcttattgttttccaccatgtggccatagagacaaatgcctaaactttgtggaaggacagtgaaaatatgtatcaaagaaataccgcacaaaacaaaat |
38994367 |
T |
|
| Q |
366 |
tttc |
369 |
Q |
| |
|
|||| |
|
|
| T |
38994366 |
tttc |
38994363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 38994624 - 38994541
Alignment:
| Q |
147 |
ttactacaaggatatgtatgatcctgtagaaaagggagacacgaagccagataaggtgacagatgaagactggaaaaagtctca |
230 |
Q |
| |
|
|||| ||||||||||||||| || |||||||||||| |||| |||| |||| || |||| ||||||||||| ||| ||||||| |
|
|
| T |
38994624 |
ttacaacaaggatatgtatgttcatgtagaaaagggggacatgaagtcagacaaagtgatagatgaagactaaaaagagtctca |
38994541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38994707 - 38994631
Alignment:
| Q |
1 |
agcccaacaagtggtatcagagctccggttggagctcgagagtatagtgtaaattaattgga-ggagaacactggta |
76 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||| ||| |||| ||||| ||| |||||||||||||| |
|
|
| T |
38994707 |
agcccaacaagtggtatcagagctctagttgaaactcgagattattatgtatattaaacggagggagaacactggta |
38994631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 38996890 - 38996810
Alignment:
| Q |
301 |
aatgcccagactctgtggaagaacatcgaaaagatgtatcaaagaaagaccgcacaaaacaaaactttcgctattagaaag |
381 |
Q |
| |
|
|||| ||| ||| |||||| |||||| |||||||| |||||||||||||| ||||| |||||| | | | |||||||||| |
|
|
| T |
38996890 |
aatgtccaaactttgtggatgaacattgaaaagatttatcaaagaaagactccacaacacaaaattgttgatattagaaag |
38996810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 2757194 - 2757156
Alignment:
| Q |
28 |
gttggagctcgagagtatagtgtaaattaattggaggag |
66 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2757194 |
gttggagctcgagattatagtgtaaattaaatggaggag |
2757156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15290586 - 15290616
Alignment:
| Q |
1 |
agcccaacaagtggtatcagagctccggttg |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15290586 |
agcccaacaagtggtatcagagctccggttg |
15290616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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