View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_22 (Length: 392)
Name: NF14142_low_22
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 42487543 - 42487152
Alignment:
| Q |
1 |
tagttgggtcacactgctctcagtggagccaaataatttgtacaaatggtccattttgatatcatagaactttagagatgcagatgtggatcgttagttc |
100 |
Q |
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| T |
42487543 |
tagttgggtcacactgctctcagtggagccaaataatttgtacaaatggtccattttgatatcatagaactttagagatgcagatgtggatcgttagttc |
42487444 |
T |
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| Q |
101 |
ttcaatgtgaggatgatagaagttcttctttttgtggacccttaaggtacataattttattggtgaaaatgaggtagcactagcaactagctaggacaca |
200 |
Q |
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| T |
42487443 |
ttcaatgtgaggatgatagaagttcttcttttcgtggacccttaaggtacataattttattggtgaaaatgaggtagcactagcaactagctaggacaca |
42487344 |
T |
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| Q |
201 |
ctaagaattggtacaatatctgagcactgtcaaccaaacttagtgaacaattgaaagttaaggaggtacaatagtagctggcgtaagtgatatacaggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42487343 |
ctaagaattggtacaatatctgagcactgtcaaccaaacttagtgaacaattgaaagttaaggaggtacaatagtagctggcgtaagtgatatacaggga |
42487244 |
T |
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| Q |
301 |
ccatcaagatctgggaaatcgtttttgatatttgaaatattattattaacatcaaattaacctttatatgattatttatgttattgttaatc |
392 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42487243 |
ccatcaagatctggaaaatcgtttttgatatttgaaatattattattaacatcaaattaacctttatatgattatttatgttattgttaatc |
42487152 |
T |
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