View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_23 (Length: 351)
Name: NF14142_low_23
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 33850972 - 33851248
Alignment:
| Q |
10 |
aagaatataagcatactagtcctaaatacataacatgacattatatcatatacacaaacaaacgatcgacttaattgttttcagaatgattgattccatt |
109 |
Q |
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| T |
33850972 |
aagactataagcaaactagtccta----cataacatcacataatatcatatacacaaacaaacgatcgactttattgttgccaaaatgattgattccatt |
33851067 |
T |
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| Q |
110 |
attatatattattatcagtcacttttcg-tggggttttcgttaacagattgtttatattactacttctagaagtcaatggaaacatgcatctttatgaat |
208 |
Q |
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| T |
33851068 |
attatatattattatcagtcacttttctatggggttttctttaacagattgtttatattactacttctagaagtcaatggaaacatgcatctttatgaat |
33851167 |
T |
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| Q |
209 |
atgattatgtggagagtagacatgcacgttaaaggcctacgtagcaatttgatacgtgcttcccaatttgttttcatctcc |
289 |
Q |
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| T |
33851168 |
atgattatgtggagagtagacatgcacgttaaaggcctacgtagcaatttgatacgtgcttcccgatttgttttcatctcc |
33851248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 33755469 - 33755744
Alignment:
| Q |
10 |
aagaatataagcatactagtcctaaatacataacatgacattatatcatatacacaaacaaacgatcgacttaattgttttcagaatgattgattccatt |
109 |
Q |
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| T |
33755469 |
aagactataagcaaactagtccta----cataacatcacataatatcatatacacaaacaaacgatcgactttattgttgccaaaatgattgattccatt |
33755564 |
T |
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| Q |
110 |
attatatattattatcagtcacttttcgtggggttttcgttaacagattgtttatattactacttctagaagtcaatggaaacatgcatctttatgaata |
209 |
Q |
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| T |
33755565 |
attatatattattatcagtcacttttcatggggttttctttaacagattgtttatattactacttctagaagtcaatgaaaacatgcatctttatgaata |
33755664 |
T |
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| Q |
210 |
tgattatgtggagagtagacatgcacgttaaaggcctacgtagcaatttgatacgtgcttcccaatttgttttcatctcc |
289 |
Q |
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| T |
33755665 |
tgattatgtggagagtaaacatgcacgttaaaggcctacgtagcaatttgatacgtgcttcccgatttgttttcatctcc |
33755744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 33893206 - 33892991
Alignment:
| Q |
54 |
atcatatacacaaacaaacgatcgacttaattgttttcagaatgattgattccattattatatattattatcagtcacttttcgtggggttttcgttaac |
153 |
Q |
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| T |
33893206 |
atcatatacacaaacaaacaatcgactttattgttgccaaaatgattgatttcattattatatatcattatcagtcacttttcttggggctctctttaac |
33893107 |
T |
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| Q |
154 |
agattgtttatattactacttctagaagtcaatggaaacatgcatctttatgaatatgattatgtggagagtagacatgcacgttaaaggcctacgtagc |
253 |
Q |
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| T |
33893106 |
aatttgtttatattactacttctagaagtcaaacgaaacatgcatctttatgaatatgattgtgtggataatagacatgcacgttaaaggcctctggagc |
33893007 |
T |
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| Q |
254 |
aatttgatacgtgctt |
269 |
Q |
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| T |
33893006 |
aatttgatacgtgctt |
33892991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 33892070 - 33891990
Alignment:
| Q |
209 |
atgattatgtggagagtagacatgcacgttaaaggcctacgtagcaatttgatacgtgcttcccaatttgttttcatctcc |
289 |
Q |
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||||||||||||| | || |||||||||||||||| |||| |||||||||| ||||||||||| |||| ||||||||||| |
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| T |
33892070 |
atgattatgtggatacaaggcatgcacgttaaaggcatacggagcaatttgacacgtgcttccccatttattttcatctcc |
33891990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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