View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_24 (Length: 351)

Name: NF14142_low_24
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_24
NF14142_low_24
[»] chr7 (1 HSPs)
chr7 (6-336)||(40307308-40307634)
[»] chr3 (3 HSPs)
chr3 (21-92)||(7470635-7470706)
chr3 (21-84)||(7487099-7487162)
chr3 (144-187)||(25060410-25060453)
[»] chr5 (1 HSPs)
chr5 (226-305)||(9378380-9378456)
[»] chr8 (2 HSPs)
chr8 (22-90)||(6662155-6662223)
chr8 (22-90)||(6742557-6742625)
[»] chr4 (1 HSPs)
chr4 (6-92)||(25658785-25658871)
[»] chr1 (1 HSPs)
chr1 (11-92)||(3254284-3254366)
[»] scaffold1190 (1 HSPs)
scaffold1190 (21-90)||(2235-2304)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 40307634 - 40307308
Alignment:
Q  6 cacagagatataacctattattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataataaaatatcatccacat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40307634 cacagagatataacctattattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataatctgagaataataaaatatcatccacat 40307535  T
Q  106 gtcattttaattaattattaattgcaaagtcatgttaattatttagagttatgattgataatgcagatgatgatctggttgagtcacttttctcatttct 205  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  40307534 gtcattttaattaattattaattgcaaagttatgttaattatttagagttatgattgataatgcggatgatgatctggttgagtcacttttgtcatttct 40307435  T
Q  206 ttcggcgatttgaaactgtttaaggttgaagctttgattgatgcagatccaaatatattgatgaagcatccgttcatgttgaagcttcaaatgttaattc 305  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  40307434 ttcggcgatttgaaactg--taaggttgaagctttgattgatgcagatccaa--atattgatgaagcatccgttcatgttgaagcttcaaatgttaattc 40307339  T
Q  306 tggtgtcacctcaatatgaagaccatgtttg 336  Q
    |||||||||||||||||||||||| ||||||    
T  40307338 tggtgtcacctcaatatgaagaccgtgtttg 40307308  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 7470635 - 7470706
Alignment:
Q  21 tattattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataataaa 92  Q
    |||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  7470635 tattattttcaatcattgatctaaacatagatgatacatcgccatcattatgaataacctgaggatagtaaa 7470706  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 7487099 - 7487162
Alignment:
Q  21 tattattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgaga 84  Q
    |||||||||||| ||| |||||||| ||| ||| |||||| |||| ||||||||||||||||||    
T  7487099 tattattttcaatcatcgatctaaacatagatgctacatcgccataattatgaataacctgaga 7487162  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 25060453 - 25060410
Alignment:
Q  144 ttatttagagttatgattgataatgcagatgatgatctggttga 187  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||    
T  25060453 ttatttatagttatggttgataatgcaggtgatgatctggttga 25060410  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 9378456 - 9378380
Alignment:
Q  226 taaggttgaagctttgattgatgcagatccaaatatattgatgaagcatccgttcatgttgaagcttcaaatgttaattc 305  Q
    ||||||||||| || | |||||||| ||||||||||   |||||||| || |||||||||||||||||| || |||||||    
T  9378456 taaggttgaagtttcggttgatgcaaatccaaatat---gatgaagcttctgttcatgttgaagcttcacattttaattc 9378380  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 6662155 - 6662223
Alignment:
Q  22 attattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataata 90  Q
    ||||||||||| |||||| ||||| ||  ||| ||||||||||||||||| |||||| |||| ||||||    
T  6662155 attattttcaatcattgacctaaacatggatgctacatcaccatcattattaataacatgaggataata 6662223  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 6742557 - 6742625
Alignment:
Q  22 attattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataata 90  Q
    ||||||||||| |||||| ||||| ||  ||| ||||||||||||||||| |||||| |||| ||||||    
T  6742557 attattttcaatcattgacctaaacatggatgctacatcaccatcattattaataacatgaggataata 6742625  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 25658785 - 25658871
Alignment:
Q  6 cacagagatataacctattattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataataaa 92  Q
    |||| |||||||||||||||||||||||||  || ||||| ||| ||  ||| |||| ||||| |||||||||| ||  ||||||||    
T  25658785 cacatagatataacctattattttcaaccacagacctaaacatatattctacgtcactatcatcatgaataaccagatgataataaa 25658871  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 3254366 - 3254284
Alignment:
Q  11 agatataacctattattttcaa-ccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataataaa 92  Q
    ||||||||| ||||||||| || |||||||  |||| ||| ||| |||||| ||||||||||||||||||  || ||||||||    
T  3254366 agatataacttattatttttaaaccattgacataaacatagatgctacatcgccatcattatgaataacccaaggataataaa 3254284  T

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Target: scaffold1190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 2304 - 2235
Alignment:
Q  21 tattattttcaaccattgatctaaatataaatgatacatcaccatcattatgaataacctgagaataata 90  Q
    |||||||||||| ||| || ||||| ||  ||| ||||||||||||||||| |||||| |||| ||||||    
T  2304 tattattttcaatcatcgacctaaaaatggatgctacatcaccatcattattaataacatgaggataata 2235  T

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