View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_25 (Length: 349)

Name: NF14142_low_25
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_25
NF14142_low_25
[»] chr5 (8 HSPs)
chr5 (16-349)||(38165961-38166294)
chr5 (16-317)||(38173598-38173899)
chr5 (16-317)||(38200822-38201123)
chr5 (256-317)||(11588427-11588488)
chr5 (58-154)||(11592885-11592978)
chr5 (114-245)||(11490609-11490737)
chr5 (16-91)||(11589961-11590037)
chr5 (211-245)||(11483230-11483264)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 38165961 - 38166294
Alignment:
Q  16 attcaaattagatgaaattggttttgaattcttatagttgtatttttggtatagaaagcatggaaggaagaaaaagtatacaatcatccctccttcaaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  38165961 attcaaattagatgaaattggttttgaattcttatagttgtatttttggtatagaaagcatggaaggaagaaaaagtatacaattacccctccttcaaat 38166060  T
Q  116 tgatttaaatgagttggcttcagcccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccgatatcattgagccgggtggtgcc 215  Q
    ||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38166061 tgatttaaatgggccggcttcagtccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccgatatcattgagtcgggtggtgcc 38166160  T
Q  216 gttgcaattctaaactctaatgataataacgtcgcaactctaaactctgacaaaaataacttaattcaagctgagtcagtaccagaagaaagtcatcccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38166161 gttgcaattctaaactctaatgataataacgtcgcaactctaaactctgacgaaaataacttaattcaagctgagtcaggaccagaagaaagtcatcccc 38166260  T
Q  316 cagggagagtacagaggaaaagtatacattggac 349  Q
    |||||||||||||||| |||||||||||||||||    
T  38166261 cagggagagtacagagaaaaagtatacattggac 38166294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 38173899 - 38173598
Alignment:
Q  16 attcaaattagatgaaattggttttgaattcttatagttgtatttttggtatagaaagcatggaaggaagaaaaagtatacaatcatccctccttcaaat 115  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38173899 attcaaattggatgaaattgattttgaattcttatagttgtatttttggtatagaaagcatggaaggaagaaaaagtatacaatcatccctccttcaaat 38173800  T
Q  116 tgatttaaatgagttggcttcagcccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccgatatcattgagccgggtggtgcc 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| | |||  ||||    
T  38173799 tgatttaaatgagtcggcttcagcccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccaatatcgatgagtcaggtcatgcc 38173700  T
Q  216 gttgcaattctaaactctaatgataataacgtcgcaactctaaactctgacaaaaataacttaattcaagctgagtcagtaccagaagaaagtcatcccc 315  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||    
T  38173699 gttgcaattctaaactctaatgataatagcgtcgaaactctaaactctaacgaaaataacttaattcaagctgagtcagtaccagaagaaagtcatgccc 38173600  T
Q  316 ca 317  Q
    ||    
T  38173599 ca 38173598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 38201123 - 38200822
Alignment:
Q  16 attcaaattagatgaaattggttttgaattcttatagttgtatttttggtatagaaagcatggaaggaagaaaaagtatacaatcatccctccttcaaat 115  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38201123 attcaaattggatgaaattgattttgaattcttatagttgtatttttggtatagaaagcatggaaggaagaaaaagtatacaatcatccctccttcaaat 38201024  T
Q  116 tgatttaaatgagttggcttcagcccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccgatatcattgagccgggtggtgcc 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| | |||  ||||    
T  38201023 tgatttaaatgagtcggcttcagcccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccaatatcgatgagtcaggtcatgcc 38200924  T
Q  216 gttgcaattctaaactctaatgataataacgtcgcaactctaaactctgacaaaaataacttaattcaagctgagtcagtaccagaagaaagtcatcccc 315  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||    
T  38200923 gttgcaattctaaactctaatgataatagcgtcgaaactctaaactctaacgaaaataacttaattcaagctgagtcagtaccagaagaaagtcatgccc 38200824  T
Q  316 ca 317  Q
    ||    
T  38200823 ca 38200822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 11588427 - 11588488
Alignment:
Q  256 taaactctgacaaaaataacttaattcaagctgagtcagtaccagaagaaagtcatccccca 317  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  11588427 taaacactgacgaaaataacttaattcaagctgagtcagtaccaggagaaagtcatgcccca 11588488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 11592885 - 11592978
Alignment:
Q  58 tttttggtatagaaagcatggaaggaagaaaaagtatacaatcatccctccttcaaattgatttaaatgagttggcttcagcccaagatccctctga 154  Q
    ||||||||||||||||||||||| ||||||||||   | ||||||     | ||| |||||||||||||||  |||||||| |||||||||||||||    
T  11592885 tttttggtatagaaagcatggaaagaagaaaaag---aaaatcattagctcatcatattgatttaaatgagcgggcttcagtccaagatccctctga 11592978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 11490609 - 11490737
Alignment:
Q  114 attgatttaaatgagttggcttcagcccaagatccctctgagcatagcatggaacaacaacaggagaaaactggcaccgatatcattgagccgggtggtg 213  Q
    |||||||||||||||  | |||||   ||||||||||||||| |||||||||||||||||   |||||    | ||| ||| |||||||| |||||  ||    
T  11490609 attgatttaaatgagcggacttcaattcaagatccctctgagaatagcatggaacaacaa---gagaatctcgacactgatgtcattgagtcgggtcatg 11490705  T
Q  214 ccgttgcaattctaaactctaatgataataac 245  Q
    | |  |||||||||||| ||||||||||||||    
T  11490706 ctgccgcaattctaaaccctaatgataataac 11490737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 11589961 - 11590037
Alignment:
Q  16 attcaaattagatgaaattggttttgaattcttatagttg-tatttttggtatagaaagcatggaaggaagaaaaag 91  Q
    |||||||||  |||||||||||||  |||| ||||||||| | |||||| |||||||| ||||||| ||||||||||    
T  11589961 attcaaatttaatgaaattggtttcaaatttttatagttgttttttttgttatagaaaacatggaaagaagaaaaag 11590037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 11483230 - 11483264
Alignment:
Q  211 gtgccgttgcaattctaaactctaatgataataac 245  Q
    ||||||||||||||| |||||||||||||||||||    
T  11483230 gtgccgttgcaattccaaactctaatgataataac 11483264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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