View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14142_low_26 (Length: 340)
Name: NF14142_low_26
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 396905 - 396590
Alignment:
| Q |
8 |
gcagcagcacagacctggattactcttatgacaggattgccatacgccttaacatatcgatattttcgagatcctgctaagaatgaaatcaaggctataa |
107 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
396905 |
gcagcaacaaagacctggattactcttatgacaggattgccatacgccttaacatatcgatattttcgagatcctgctaagaatgaaatcaaggctataa |
396806 |
T |
|
| Q |
108 |
tagcagaggccaaggagacaccgaaacccaatgtccacataccggtatcttcgtaataaaccaaaatggtgttggaaaagagtgatccaacattgagtgc |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
396805 |
tagcagaggctaaggagacaccgaaacccaatgtccacataccggtatcttcgtaataaaccaaaatggtgttggaaaatagtgatccaacattgagtgc |
396706 |
T |
|
| Q |
208 |
aaagtaaaagtaactaaagaaagcctctctggagttggtttgttgaatactcttatcatcaaattgatcagctccaaatgttgctaaggtaggttgatgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
396705 |
aaagtaaaagtaactaaagaaagcctctctggagttggtttgttgaatactcttatcatcaaattgatcagctccaaatgttgctaaggtaggttgatgc |
396606 |
T |
|
| Q |
308 |
cctccatatccaaatg |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
396605 |
cctccatatccaaatg |
396590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 3803753 - 3804064
Alignment:
| Q |
18 |
agacctggattactcttatgacaggattgccatacgccttaacatatcgatattttcgagatcctgctaagaatgaaatcaaggctataatagcagaggc |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3803753 |
agacctgaattactcttatgacaggattcccacacgccttaacataacgatatcttcgagatcctgctaagaatgaaatcaaggctataatagcagaggc |
3803852 |
T |
|
| Q |
118 |
caaggagacaccgaaacccaatgtccacataccggtatcttcgtaataaaccaaaatggtgttggaaaagagtgatccaacattgagtgcaaagtaaaag |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3803853 |
tagcgagacaccgaaacccaatgtccacataccggaatcttcataataaaccaaaatggtgttggaaaagagtgatccaacattgagtgcaaagtaaaag |
3803952 |
T |
|
| Q |
218 |
taactaaagaaagcctctctggagttggtttgttgaatactctt------atcatcaaattgatcagctccaaatgttgctaaggtaggttgatgccctc |
311 |
Q |
| |
|
|||||||||||||||||||| ||| || | ||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3803953 |
taactaaagaaagcctctctcaagtaagtgttttgaatatttttatcatcatcatcaaattgatcagctccaaaggttgctaaggtaggttgatgccctc |
3804052 |
T |
|
| Q |
312 |
catatccaaatg |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3804053 |
catatccaaatg |
3804064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 52810871 - 52810931
Alignment:
| Q |
263 |
tcatcaaattgatcagctccaaatgttgctaaggtaggttgatgccctccatatccaaatg |
323 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||| ||||| || |||||||| ||||||| |
|
|
| T |
52810871 |
tcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatg |
52810931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University