View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_27 (Length: 338)
Name: NF14142_low_27
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 4488395 - 4488186
Alignment:
| Q |
20 |
gtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttat |
119 |
Q |
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| T |
4488395 |
gtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtgatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttat |
4488296 |
T |
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| Q |
120 |
ttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaagatcaaactggattct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
4488295 |
ttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcaccaatagtgctaaaatcaaactggattct |
4488196 |
T |
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| Q |
220 |
tcctcaaata |
229 |
Q |
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|||||||||| |
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| T |
4488195 |
tcctcaaata |
4488186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 19023911 - 19023787
Alignment:
| Q |
105 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaag |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||| |
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| T |
19023911 |
caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttattatcaccaatagtgccaag |
19023812 |
T |
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| Q |
205 |
atcaaactggattcttcctcaaata |
229 |
Q |
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| T |
19023811 |
atcaaactggattcatcctcaaata |
19023787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 1409717 - 1409606
Alignment:
| Q |
20 |
gtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttcaatgggtggcttat |
119 |
Q |
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| T |
1409717 |
gtagtgattgaatcagatgatgtggcatctgcggtggcagaggaagtaaccaagtatgctgtaacgaaattggtcgttggagcttcaaccggtggcttat |
1409618 |
T |
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| Q |
120 |
ttaaaaggtact |
131 |
Q |
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|||||||||||| |
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| T |
1409617 |
ttaaaaggtact |
1409606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 1409608 - 1409549
Alignment:
| Q |
170 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
229 |
Q |
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| T |
1409608 |
actaataaagatttattatcaccaatagttctaagatcaaactgcattcttcctcaaata |
1409549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 1402858 - 1402810
Alignment:
| Q |
19 |
agtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagta |
67 |
Q |
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| T |
1402858 |
agtagtgattgaatcagatgatgtagcaactgcagtagcagaggaagta |
1402810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 14244914 - 14244855
Alignment:
| Q |
170 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
229 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14244914 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
14244855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 6355464 - 6355405
Alignment:
| Q |
170 |
actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata |
229 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6355464 |
actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata |
6355405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 40682237 - 40682322
Alignment:
| Q |
21 |
tagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttca |
106 |
Q |
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| T |
40682237 |
tagtgattgaatcagatgatgtagcaattgcaatagcagaggaagtagctaaggatgctataaccaaacttgtccttggagcttca |
40682322 |
T |
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