View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_28 (Length: 337)
Name: NF14142_low_28
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2991380 - 2991047
Alignment:
| Q |
1 |
tacatggtgttgattgcaaagatttaatatggtcatataattgtgtgttccaatctctgaagctgattaatcctcagtcttctctcaagcatacatacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2991380 |
tacatggtgttgattgcaaagatttaatatggtcatataattgtgtgttccaatctctgaagctgattaatcctcagtcttctctcaagcatacatgcat |
2991281 |
T |
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| Q |
101 |
gctagtaaaatctttaaagttgacnnnnnnnnnncaaaatccttgtatagcctcaaatcttatcctcattaacttctcttaattagtttacaatataaaa |
200 |
Q |
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| T |
2991280 |
gctagtaaaatctttaaagttgacaaaaaa-----aaaatccttgtatagcctcaaatcttatcctcattaacttctcttaattagtttacaatataaaa |
2991186 |
T |
|
| Q |
201 |
attagtacaaaaatctagaaagaatgaatttgttcaccatttaaatcttgtaaaatatt--nnnnnnnnnnnnnnnttcaaaccaatgaatcagagcact |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
2991185 |
attagtacaaaaatctagaaagaatgaatttgttcaccatttaaatcttgtaaaatattaaaaaataaataaaaaattcaaactaatgaatcagagcact |
2991086 |
T |
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| Q |
299 |
cttttgtgccacatgaacttgaattgacaatcactttct |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2991085 |
cttttgtgccacatgaacttgaattgacaatcactttct |
2991047 |
T |
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