View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_29 (Length: 329)
Name: NF14142_low_29
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 16643876 - 16643627
Alignment:
| Q |
17 |
gaacaatattacgattattatttttctgcgtaatggtgatttggatggttacctttgaagagactcaaaaggtattacttttgccttgtgcacttaaatt |
116 |
Q |
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| T |
16643876 |
gaacaatattacgattattatatttctgcgtgatggtaatttggatggttacctttgaagagactcaaaaggtattacttttgccttgtgcacttaaatt |
16643777 |
T |
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| Q |
117 |
ttccaagaaccttgtacacatacatggctagcatgctttattaatacgaattaggattatattttcttgcatttgttgctaaatgattgtgaatgtggtt |
216 |
Q |
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| T |
16643776 |
ttccaagaaccttgtacacatacatggctagcatgctttattaatacgaattaaaattatattttcttgcatttgttgctaaatgattgtgaatgtggtt |
16643677 |
T |
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| Q |
217 |
ttcgtttttgtttattggttcaatgacaaattaggcaacatacattattg |
266 |
Q |
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| T |
16643676 |
ttcgtttatgtttattggttcaatgacaaattaggcaacatacattattg |
16643627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 17618237 - 17617988
Alignment:
| Q |
17 |
gaacaatattacgattattatttttctgcgtaatggtgatttggatggttacctttgaagagactcaaaaggtattacttttgccttgtgcacttaaatt |
116 |
Q |
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||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17618237 |
gaacaatattacgattattatatttctgcgtgatggtaatttggatggttacctttgaagagactcaaaaggtattacttttgccttgtgcacttaaatt |
17618138 |
T |
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| Q |
117 |
ttccaagaaccttgtacacatacatggctagcatgctttattaatacgaattaggattatattttcttgcatttgttgctaaatgattgtgaatgtggtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17618137 |
ttccaagaaccttgtacacatacatggctagcatgctttattaatacgaattaaaattatattttcttgcatttgttgctaaatgattgtgaatgtggtt |
17618038 |
T |
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| Q |
217 |
ttcgtttttgtttattggttcaatgacaaattaggcaacatacattattg |
266 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17618037 |
ttcgtttatgtttattggttcaatgacaaattaggcaacatacattattg |
17617988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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