View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_33 (Length: 297)
Name: NF14142_low_33
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 34228894 - 34228609
Alignment:
| Q |
1 |
aagtatcttgctttgagaattattgccaccaaagagtccagtttctgcaagatacgccactccacccttgcatcgccactccacccttttcgaggcatga |
100 |
Q |
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| T |
34228894 |
aagtatcttgctttgagaattattgccaccaaagtgtccagtttctgcaagatacgccactccacccttgcatcgccactccacccttttcgaggcatga |
34228795 |
T |
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| Q |
101 |
attacttcaatagcctccacgaaagcatattcttcatgagaaatacacttgtcaaggcagcatttcaatttgttagcaagaagtttggaaatcattttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34228794 |
attacttcaatagcctccacgaaagcatattcttcatgagaaatacacttgtcaaggcagcatttcaatctgttagcaagaagtttggaaatcattttat |
34228695 |
T |
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| Q |
201 |
acaatacgttacacaactagataggacacaaacccctcatggaaataggattttcacacttcggaataagccagatattcatctca |
286 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228694 |
acaagacgttacacaactagataggacacaaatccctcatggaaataggattttcacacttcggaataagccagatattcatctca |
34228609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34237514 - 34237455
Alignment:
| Q |
1 |
aagtatcttgctttgagaattattgccaccaaagagtccagtttctgcaagatacgccac |
60 |
Q |
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|||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34237514 |
aagtatattgatttgagaatttttgccaccaaagagtccagtttctgcaagatacgccac |
34237455 |
T |
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