View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_35 (Length: 283)
Name: NF14142_low_35
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 4488099 - 4487857
Alignment:
| Q |
32 |
agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtttctata |
131 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488099 |
agatctctgctggttcgttttctgtttacgctcaattatttgattgttttttatagattgattttatatttaagtaattgtaatttatgcagtttctata |
4488000 |
T |
|
| Q |
132 |
gattgattttagtattgcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccgctgagtgaaggtgtgactagacgcaaacgttggt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4487999 |
gattgattttagtattgcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccgctgagtgaaggtgtgactatacgcaaacgttggt |
4487900 |
T |
|
| Q |
232 |
ttctaagtgtatgatattaaaacaggatagcgatttttgatga |
274 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4487899 |
ttctaagtgtatgatattaaaacatgatagcgatttttgatga |
4487857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 19023732 - 19023458
Alignment:
| Q |
1 |
tttgtttatttgtaaaatttgatcnnnnnnnagatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19023732 |
tttgtttatttgtaaaatttgagttttttttagatctctgctggttcattttctgtttacactcaattatttgattgttttctgtagattgattttatat |
19023633 |
T |
|
| Q |
101 |
ttaagtaattgtaatttatgcagtttctatagattgattttagtatt-gcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccgct |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19023632 |
ttgggtaattgtaatttatgcagtttctatagattgattttagcattggcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccact |
19023533 |
T |
|
| Q |
200 |
gagtgaaggtgtgactagacgcaaacgttggtttctaagtgtatgatattaaaacaggatagcgatttttgatga |
274 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||| |
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|
| T |
19023532 |
gagtgaaggtcagactattcgcaaacgttggtttctaagtgtgtgatattaaatcatgatagcgatttttgatga |
19023458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 22067458 - 22067357
Alignment:
| Q |
173 |
agcttttgttgtaagttaaaccccgctgagtgaaggtgtgactagacgcaaacgttggtttctaagtgtatgatattaaaacaggatagcgatttttgat |
272 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22067458 |
agcttttgttgtaagttaaaccccactgagtgaaggtcagactatacgcaaatgttggtttctaagtgtatgatattaaaacatgatagcgatttttgat |
22067359 |
T |
|
| Q |
273 |
ga |
274 |
Q |
| |
|
|| |
|
|
| T |
22067358 |
ga |
22067357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 14244793 - 14244700
Alignment:
| Q |
32 |
agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtt |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
14244793 |
agatctctgctggttagttttctgtttacactcaattatttgattgttttctatagattgattttatagttgggtaattgtaatttatgcagtt |
14244700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 6355343 - 6355250
Alignment:
| Q |
32 |
agatctctgctggttcgttttctgtttacactcaattatttgattgttttctatagattgattttatatttaagtaattgtaatttatgcagtt |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
6355343 |
agatctctgctggttagttttctgtttacactcaattatttgattgttttctatagattgattttatagttgggtaattgtaatttatgcagtt |
6355250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 22621794 - 22621667
Alignment:
| Q |
148 |
gcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccg-ctgagtgaaggtgtgactagacgcaaacgttggtttctaagtgtatgat |
246 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||| ||||| || ||||||||||| |||||||| |
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| T |
22621794 |
gcagttataattgtgtgtgttagttaacttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtttctaaatgtatgat |
22621695 |
T |
|
| Q |
247 |
attaaaacaggatagcgatttttgatga |
274 |
Q |
| |
|
||||||||| |||||||| ||||||||| |
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|
| T |
22621694 |
attaaaacatgatagcgaattttgatga |
22621667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 6624755 - 6624801
Alignment:
| Q |
79 |
tttctatagattgattttatatttaagtaattgtaatttatgcagtt |
125 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| ||||| |
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|
| T |
6624755 |
tttctatagattgattttatatttaggtaattgtaacttatacagtt |
6624801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 6790986 - 6791032
Alignment:
| Q |
79 |
tttctatagattgattttatatttaagtaattgtaatttatgcagtt |
125 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
6790986 |
tttctatagattgattttatatttgggtaattgtaacttatgcagtt |
6791032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 6597226 - 6597272
Alignment:
| Q |
79 |
tttctatagattgattttatatttaagtaattgtaatttatgcagtt |
125 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||||||||| |
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|
| T |
6597226 |
tttctatagattaattttatatttgggtaattgtaacttatgcagtt |
6597272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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