View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_38 (Length: 258)

Name: NF14142_low_38
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_38
NF14142_low_38
[»] chr8 (3 HSPs)
chr8 (2-248)||(9290871-9291116)
chr8 (42-248)||(8212610-8212815)
chr8 (2-50)||(8213409-8213457)
[»] chr3 (1 HSPs)
chr3 (2-248)||(51425063-51425309)
[»] chr4 (5 HSPs)
chr4 (48-248)||(7054103-7054303)
chr4 (69-248)||(1702263-1702444)
chr4 (69-248)||(9990915-9991096)
chr4 (151-248)||(16613348-16613447)
chr4 (2-66)||(7053985-7054049)
[»] scaffold0442 (1 HSPs)
scaffold0442 (62-248)||(11960-12146)
[»] chr2 (4 HSPs)
chr2 (65-248)||(38981173-38981356)
chr2 (2-66)||(38981410-38981474)
chr2 (69-161)||(24867045-24867135)
chr2 (204-240)||(24867137-24867173)
[»] scaffold0320 (2 HSPs)
scaffold0320 (48-248)||(13833-14033)
scaffold0320 (2-66)||(14087-14151)
[»] chr6 (1 HSPs)
chr6 (2-58)||(13718161-13718217)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 9291116 - 9290871
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatatattacaattctttatatattacaacaacaccatacaaaaaccatgaaagcca 101  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9291116 ttgcatgtaatttatatatttt-catgaatctacaaataaaataatatattacaattctttatatattacaacaacaccatacaaaaaccatgaaggcca 9291018  T
Q  102 taaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctc 201  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  9291017 caaatttctcgagtgacttaaacaaacaaaaatggtaaccataatttatggactgttccaaattatgtgtcataatacttgagcatgtatattcatccta 9290918  T
Q  202 gtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  9290917 gtactacttgatcttttcatcccactatgtggctttgtttctatatt 9290871  T

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Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 8212815 - 8212610
Alignment:
Q  42 aataatatattacaattctttatatattacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaacc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||    
T  8212815 aataatatattacaattctttatatattacaacaacaccatacaaaaaccatgaatgccacaaatttctcaagtgacttaaacaaacaaaaatggtaacc 8212716  T
Q  142 ataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgtggctttgttt 241  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8212715 ataatttatggactgttccaaatcgtgtgtcataatacttaagcatg-atatttatcctcgtactacttggtcttttcatcccactatgtggctttgttt 8212617  T
Q  242 ctatatt 248  Q
    |||||||    
T  8212616 ctatatt 8212610  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 8213457 - 8213409
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatata 50  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8213457 ttgcatgtaatttatatatttttcatgaacctacaaataaaataatata 8213409  T

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Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 51425309 - 51425063
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatatattacaattctttatatattacaacaacaccatacaaaaaccatgaaagcca 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| || |||     
T  51425309 ttgcatgtaatttatatatttttcatgaacctacaaataaaataatatattacacttatttatatattacaacaacaccatacaaaaatcataaaggccg 51425210  T
Q  102 taaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctc 201  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||     
T  51425209 caaatttctcgagtgacttaaacaaacaaaaatggtaaccataatttatggacttttccaaattgtgtgtcataatacttgagaatgtatattcatcctt 51425110  T
Q  202 gtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  51425109 gtactacttgatcttttcatcccactatgtggctttgtttctatatt 51425063  T

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Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 48 - 248
Target Start/End: Original strand, 7054103 - 7054303
Alignment:
Q  48 atattacaattctttatatattacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatt 147  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  7054103 atattacaatcctttatatattacaacaacaccaaaaaaaaaccatcaaggccacaaatttctcgagtgacttaaacaaacaaaaatggtaaccataatt 7054202  T
Q  148 tatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7054203 tatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatat 7054302  T
Q  248 t 248  Q
    |    
T  7054303 t 7054303  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 248
Target Start/End: Original strand, 1702263 - 1702444
Alignment:
Q  69 tacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttccaaattgtg 168  Q
    ||||||| ||||| ||||| |||||||| |||| |||||||||| ||||||||||||||||||| | |||||||| ||||  ||||| ||||||||||||    
T  1702263 tacaacaccaccaaacaaagaccatgaatgccacaaatttctcgtgtgacttaaacaaacaaaactggtaaccattattttgggactattccaaattgtg 1702362  T
Q  169 tgtcataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    |||||||||||||||||||||||||  |||||| ||  |||||||| |||||||||| |||| ||||||||||||| |||||    
T  1702363 tgtcataatacttgagcatgtatataatcatccccgctctacttggccttttcatcctactacgtggctttgtttccatatt 1702444  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 248
Target Start/End: Original strand, 9990915 - 9991096
Alignment:
Q  69 tacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttccaaattgtg 168  Q
    ||||||| ||||| ||||| |||||||| |||| |||||||||| |||||||||||||||||||||  ||| ||| ||||  ||||| |||||||||||     
T  9990915 tacaacaccaccaaacaaagaccatgaaggccacaaatttctcgtgtgacttaaacaaacaaaaatgataatcattattttgggactattccaaattgtt 9991014  T
Q  169 tgtcataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    |||||||||||||||||||||||||  |||||| ||  |||||||| |||||||||| |||| ||||||||||||| |||||    
T  9991015 tgtcataatacttgagcatgtatataatcatccccgctctacttggccttttcatccaactacgtggctttgtttccatatt 9991096  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 16613348 - 16613447
Alignment:
Q  151 ggactgttccaaattgtgtgtcataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    ||||| |||||||||||||||||||||||||||| ||||||||  |||||| || |||||||||||||||||||| |||| ||||||||||||| |||||    
T  16613348 ggactattccaaattgtgtgtcataatacttgagaatgtatataatcatccccgcactacttggtcttttcatcctactacgtggctttgtttccatatt 16613447  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 7053985 - 7054049
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatatattacaattctttatat 66  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7053985 ttgcatgtaatttatatatttttcataaacctacaaataaaataatatattacaattccttatat 7054049  T

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Target: scaffold0442 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 62 - 248
Target Start/End: Original strand, 11960 - 12146
Alignment:
Q  62 tatatattacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttcca 161  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11960 tatagattacaacaacaccatacaaaaaccatgaaggccacaaatttctcgagtgacttaaacaaacaaaaatggtaaccataatttatggactgttcca 12059  T
Q  162 aattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12060 aattgtgtgtaataatacttgagcatgtatattcatcctcgtactacttggtcttttcatccaactatgtggctttgtttctatatt 12146  T

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Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 38981356 - 38981173
Alignment:
Q  65 atattacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttccaaat 164  Q
    ||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  38981356 atattacaacaacaccaaacaaaaaccgtgaaggccacaaatttctcgagtgacttaaacaaacaaaaatggtaaccattatttatggattgttccaaat 38981257  T
Q  165 tgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatatt 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38981256 tgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgcggctttgtttctatatt 38981173  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 38981474 - 38981410
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatatattacaattctttatat 66  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38981474 ttgcatgtaatttatatatttttcatgaacctacaaataaaataatatattacaattccttatat 38981410  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 24867045 - 24867135
Alignment:
Q  69 tacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatttatggactgttcca 161  Q
    ||||||||||||| |||||||||||  | |||| ||||||||| |||||| ||||||||||||||| ||||| |||||||  ||||| |||||    
T  24867045 tacaacaacaccaaacaaaaaccat--aggccacaaatttctcaagtgacataaacaaacaaaaatggtaactataattttgggactattcca 24867135  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 24867137 - 24867173
Alignment:
Q  204 actacttggtcttttcatcccactatgtggctttgtt 240  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  24867137 actacttggccttttcatcccactatttggctttgtt 24867173  T

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Target: scaffold0320 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 48 - 248
Target Start/End: Complemental strand, 14033 - 13833
Alignment:
Q  48 atattacaattctttatatattacaacaacaccatacaaaaaccatgaaagccataaatttctcgagtgacttaaacaaacaaaaatagtaaccataatt 147  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  14033 atattacaattctttatatattacaacaacaccaaacaaaaaccatgaagtccacaaatttcttgagtgacttaaacaaacaaaaatggtaaccataatt 13934  T
Q  148 tatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatat 247  Q
    ||  |||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13933 tacagactcttccaaattgtgtgtcataatacttccgcatgtatattcattctcgtactactaggtcttttcatcccactatgtggctttgtttctatat 13834  T
Q  248 t 248  Q
    |    
T  13833 t 13833  T

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Target: scaffold0320; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 14151 - 14087
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatatattacaattctttatat 66  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  14151 ttgcatgtaatttatatatttttcatcaacctacaaataaaataatatattacagttccttatat 14087  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 13718217 - 13718161
Alignment:
Q  2 ttgcctgtaatttatatatttttcatgaacctacaaataaaataatatattacaatt 58  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13718217 ttgcatgtaatttatatatttttcttgaacctacaaataaaataatatattacaatt 13718161  T

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