View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_4 (Length: 639)
Name: NF14142_low_4
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 16 - 624
Target Start/End: Complemental strand, 7065451 - 7064843
Alignment:
| Q |
16 |
caaaggcccgtctcatgtatgaacttcttaaatattttagcttgttatttatacaggcttgtgtaaacattctatgacttttacctgtttgcatctcgat |
115 |
Q |
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| T |
7065451 |
caaaggcccgtctcatgtatgaacttcttaaatattttagcgtgttatttatacaggcttgtgtaaacattctatgacttttacctgtttgcatctcgat |
7065352 |
T |
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| Q |
116 |
tctcaatacactttccttatggagaactgaaaactccattggtgatttaagtgacaatttaattattttccattcccatcattttacttgtttatctaat |
215 |
Q |
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| T |
7065351 |
tctcaatacactttccttatggagaactgaaaactccattggtgatttaagtaacaatttaattattttccattcccatcattttacttgtttatctaat |
7065252 |
T |
|
| Q |
216 |
cattggtttttctgtagtcaggtacatctgagtacggatcaggagagatcaatgtcagtacaataacgagggccaaaaagggaaagggaacttctggtat |
315 |
Q |
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| T |
7065251 |
cattggtttttctgtagtcaggtacatctgagtacggatcaggagagatcaatgtcagtacaataacgagggccaaaaagggaaagggaacttctggtat |
7065152 |
T |
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| Q |
316 |
atctgcttccgccggtttggatgttcatcgtgctgtgacaaatggtttctctgattcgctatccggtcaacatgtggtctcaacaagaagtcacgccatt |
415 |
Q |
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| T |
7065151 |
atctgcttccgccggtttggatgttcatcgtgctgtgacgaatggtttctctgattcgctatccggtcaacatgtggtctcaacaagaagtcacgccatt |
7065052 |
T |
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| Q |
416 |
gtagttccctctcccacatgtcaaagtccaattgaattggtacagtcagcagcattgtttcatatcaatcatctaatccgaatttgtttaataannnnnn |
515 |
Q |
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| T |
7065051 |
gtagttccctctcccacatttcaaagtccaattgaattggtacagtcagcagcattgtttcatatcaatcatctaatccgaatttgtttaatgatttttt |
7064952 |
T |
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| Q |
516 |
nnnnnnaccttttctatttcacagtgattgaaaagaggcttcatggaagcttttaggtggtacatatctaagttctatctttttgagccttctgcattac |
615 |
Q |
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| T |
7064951 |
gttttttccttttctatttcacagtgattgaaaagaggcttcatggaagcttttaggtggtacatatctaagttctatctttttgagccttctgcattac |
7064852 |
T |
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| Q |
616 |
caatattct |
624 |
Q |
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| T |
7064851 |
caatattct |
7064843 |
T |
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