View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_42 (Length: 244)

Name: NF14142_low_42
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_42
NF14142_low_42
[»] chr1 (5 HSPs)
chr1 (12-233)||(31526735-31526956)
chr1 (15-233)||(51823619-51823846)
chr1 (15-233)||(32593445-32593660)
chr1 (79-233)||(37030141-37030295)
chr1 (12-56)||(37030089-37030133)
[»] chr3 (5 HSPs)
chr3 (19-233)||(49206861-49207084)
chr3 (15-233)||(49186922-49187149)
chr3 (15-233)||(49201902-49202129)
chr3 (15-233)||(49211443-49211658)
chr3 (12-232)||(49190622-49190839)
[»] chr8 (2 HSPs)
chr8 (85-233)||(26755979-26756127)
chr8 (15-56)||(26755903-26755944)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 31526735 - 31526956
Alignment:
Q  12 caaaggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcgcctccattgtcacctccattagtccaaatactaatcttaggt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31526735 caaaggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcgcctccattgtcacctccattagtccaaatactaatcttaggt 31526834  T
Q  112 tcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaa 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31526835 tcaagtccacgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaa 31526934  T
Q  212 gtgcattgagaagtgtacttac 233  Q
    ||||||||||||||||||||||    
T  31526935 gtgcattgagaagtgtacttac 31526956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 51823619 - 51823846
Alignment:
Q  15 aggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcg---------cctccattgtcacctccattagtccaaatactaatc 105  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||||||||    
T  51823619 aggtggcagcatcttgtagacaccagcaacctctttcatacccatagaaccttcggctattccgcctccattgtcccctccattagtccaaatactaatc 51823718  T
Q  106 ttaggttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgt 205  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51823719 ttaggttcaagtccacgtactgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgt 51823818  T
Q  206 ttccaagtgcattgagaagtgtacttac 233  Q
    ||||||||||||||||||||||||||||    
T  51823819 ttccaagtgcattgagaagtgtacttac 51823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 32593660 - 32593445
Alignment:
Q  15 aggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcgcctccattgtcacctccattagtccaaatactaatcttaggttca 114  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||   |  |||  | |||||||||||||||||||||||||||||||||    
T  32593660 aggtggcagcatcttgtaaacaccagcaacctctttcatgcccatagaaccttccgtt--attc-cgcctccattagtccaaatactaatcttaggttca 32593564  T
Q  115 agtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaagtg 214  Q
    |||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32593563 agtccatgtactgcctcagcattgatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaagtg 32593464  T
Q  215 cattgagaagtgtacttac 233  Q
    |||||||||||||||||||    
T  32593463 cattgagaagtgtacttac 32593445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 37030141 - 37030295
Alignment:
Q  79 tcacctccattagtccaaatactaatcttaggttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatca 178  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||  ||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  37030141 tcacccccattagtccaaatactaatcttaggctcaagtcctcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatca 37030240  T
Q  179 agtaatcccttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttac 233  Q
    |||||||||| | ||||||||||||||||||||||||||| |||||| |||||||    
T  37030241 agtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtttacttac 37030295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 37030089 - 37030133
Alignment:
Q  12 caaaggtggcaacatcttgtaaacaccagcaacctctttcatacc 56  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||    
T  37030089 caaaggtggcaacatcttgtagacaccagcaacttctttcatacc 37030133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 49206861 - 49207084
Alignment:
Q  19 ggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcg------cctccattgt---cacctccattagtccaaatactaatcttag 109  Q
    |||||||||||||| ||||||||||| |||||||||||||| | ||||||       || ||||| |   |||| |||||||||||||||||||||||||    
T  49206861 ggcaacatcttgtagacaccagcaacttctttcatacccatggcaccttcagttattcccccattattatcaccaccattagtccaaatactaatcttag 49206960  T
Q  110 gttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttcc 209  Q
    | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  49206961 gctcaagtccgcgtaccgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttcc 49207060  T
Q  210 aagtgcattgagaagtgtacttac 233  Q
    ||||||||||||||||||||||||    
T  49207061 aagtgcattgagaagtgtacttac 49207084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 49186922 - 49187149
Alignment:
Q  15 aggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcg---------cctccattgtcacctccattagtccaaatactaatc 105  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| | ||| ||          || | ||| ||||| |||||||||||||||||||||    
T  49186922 aggtggcaacatcttgtagacaccagcaacttctttcatacccatggcaccatcagttattcccccactattatcaccaccattagtccaaatactaatc 49187021  T
Q  106 ttaggttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgt 205  Q
    ||||| |||||||||||||  ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  49187022 ttaggctcaagtccgcgtattgcctcggcattaatcttagcaatctcttgaaacatgtcaccatttatcatcaagtaatcccttacagctgtgtagtcgt 49187121  T
Q  206 ttccaagtgcattgagaagtgtacttac 233  Q
    ||||||||||||||||||||||||||||    
T  49187122 ttccaagtgcattgagaagtgtacttac 49187149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 49201902 - 49202129
Alignment:
Q  15 aggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcg---------cctccattgtcacctccattagtccaaatactaatc 105  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| | ||||||          || ||| | ||||  |||||||||||||||||||||    
T  49201902 aggtggcaacatcttgtagacaccagcaacttctttcatacccatggcaccttcagttttttcaccaccactatcactaccattagtccaaatactaatc 49202001  T
Q  106 ttaggttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgt 205  Q
    ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  49202002 ttaggctcaagtccgcgtactgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgt 49202101  T
Q  206 ttccaagtgcattgagaagtgtacttac 233  Q
    ||||||||||||| ||||||||||||||    
T  49202102 ttccaagtgcattcagaagtgtacttac 49202129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 49211443 - 49211658
Alignment:
Q  15 aggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcgcctcca---ttgtcacctccattagtccaaatactaatcttaggt 111  Q
    |||||||||||||||||| ||||||||||| ||||||||  |      |||||| || |||   || ||||| ||||||||||||||||||||||||||     
T  49211443 aggtggcaacatcttgtacacaccagcaacttctttcatcgc------accttcacccccactattatcaccaccattagtccaaatactaatcttaggc 49211536  T
Q  112 tcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaa 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||    
T  49211537 tcaagtccgcgtaccgcctcagcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttactgctgtatagttgtttccaa 49211636  T
Q  212 gtgcattgagaagtgtacttac 233  Q
    ||||||| ||||||||||||||    
T  49211637 gtgcattcagaagtgtacttac 49211658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 49190622 - 49190839
Alignment:
Q  12 caaaggtggcaacatcttgtaaacaccagcaacctctttcatacccatagaaccttcgcctcca---ttgtcacctccattagtccaaatactaatctta 108  Q
    ||||||||||||||||||||| ||||||||||| ||||||||  |      |||||| || |||   || ||||| ||||||||||||||||||||||||    
T  49190622 caaaggtggcaacatcttgtagacaccagcaacttctttcatcgc------accttcacccccactattatcaccaccattagtccaaatactaatctta 49190715  T
Q  109 ggttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttc 208  Q
    || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||    
T  49190716 ggctcaagtccgcgtactgcctcagcattaatcttagcgatctcttgaaacatgccaccatttatcatcaagaaatcccttacagcagtgtagttgtttc 49190815  T
Q  209 caagtgcattgagaagtgtactta 232  Q
    |||||||||||||||||| |||||    
T  49190816 caagtgcattgagaagtgcactta 49190839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 26755979 - 26756127
Alignment:
Q  85 ccattagtccaaatactaatcttaggttcaagtccgcgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaat 184  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || || ||| |||||||||||||||||||||||||||| |    
T  26755979 ccattagtccaaatactaatcttaggttcaagtccgcgtatagcctcagcattaatcttcgcaatatctcgaaacatgccaccatttatcatcaagtagt 26756078  T
Q  185 cccttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttac 233  Q
    |||||| |||||| || ||   ||||||||| |||||||| ||||||||    
T  26756079 cccttacagctgtataatcacctccaagtgcgttgagaagggtacttac 26756127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 26755903 - 26755944
Alignment:
Q  15 aggtggcaacatcttgtaaacaccagcaacctctttcatacc 56  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  26755903 aggtggcaacatcttgtacacaccagcaacttctttcatacc 26755944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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