View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_48 (Length: 232)

Name: NF14142_low_48
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_48
NF14142_low_48
[»] chr2 (4 HSPs)
chr2 (20-223)||(41483846-41484049)
chr2 (28-223)||(40751052-40751247)
chr2 (21-223)||(41476803-41477005)
chr2 (28-223)||(41469791-41469986)
[»] chr4 (3 HSPs)
chr4 (87-223)||(16408850-16408986)
chr4 (55-223)||(52471933-52472101)
chr4 (49-223)||(16413236-16413410)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 41484049 - 41483846
Alignment:
Q  20 tgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41484049 tgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggct 41483950  T
Q  120 ttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41483949 ttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgat 41483850  T
Q  220 cctt 223  Q
    ||||    
T  41483849 cctt 41483846  T

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Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 40751247 - 40751052
Alignment:
Q  28 ttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcatt 127  Q
    ||||||||||||||| |||||| ||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||| | |||||||    
T  40751247 ttaaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacattacatgtttcttctcaaaatatagcttggttctctcatt 40751148  T
Q  128 gtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 223  Q
    |||||||||| ||| ||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  40751147 gtgattatctgcttgacgcttctgtagatccttctcacgggacataagttcattcctccgagcttccagttccagcctggatttttcatgatcctt 40751052  T

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Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 41477005 - 41476803
Alignment:
Q  21 gagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctt 120  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||| || |||||||| ||||||||||  |     
T  41477005 gagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttc 41476906  T
Q  121 tctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatc 220  Q
    |||||||| |||||||| ||| |||||||||||||||||| ||||||||  |||| || |||||||||| |||||||||| |||| ||| ||||||||||    
T  41476905 tctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatc 41476806  T
Q  221 ctt 223  Q
    |||    
T  41476805 ctt 41476803  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 41469986 - 41469791
Alignment:
Q  28 ttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcatt 127  Q
    |||||| |||| ||| | |||||||||||||||| |||||||   ||||||  ||| | ||||||||   | ||| ||||||| ||||   | ||||  |    
T  41469986 ttaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggcccgtctgaaaatattgcttatttctctcgat 41469887  T
Q  128 gtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 223  Q
    || ||||||| ||| || ||||||||||||||| ||||| || |||||||| |||||||||||||| ||||  ||  |||||||||||| ||||||    
T  41469886 gtaattatcttcttgacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatcctt 41469791  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 16408850 - 16408986
Alignment:
Q  87 attacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctcc 186  Q
    |||||||||| |||||||| |||||||||   | ||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||| ||  |||    
T  16408850 attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcacgggacataagctcatttttcc 16408949  T
Q  187 gagcttccagttccagcctggctttttcatgatcctt 223  Q
     |||||| |||||||||||||||||||||||||||||    
T  16408950 aagcttctagttccagcctggctttttcatgatcctt 16408986  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 52472101 - 52471933
Alignment:
Q  55 attgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcag 154  Q
    ||||||| |||||| |  ||||||| ||||| ||||| |||| | |||||| |||||||||     ||||||||| ||||||||||| ||||||||||||    
T  52472101 attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag 52472002  T
Q  155 atccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 223  Q
    |||| | |||||||| ||||| || ||||||| |||||||||||||| | |||||||||||||||||||    
T  52472001 atccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatcctt 52471933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 16413236 - 16413410
Alignment:
Q  49 tttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgctt 148  Q
    ||||||||||||| |||||||| |||||||  ||||| ||||||||||   | | ||||||||||||   | || || ||||||||||| |||  |||||    
T  16413236 tttagcattgctaccataaattcaaagagctaaaataaattacatgttttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgctt 16413335  T
Q  149 ctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 223  Q
    |||||||||||| || ||  | ||||| || |||||| | ||||||||||||||  |||||||||| ||||||||    
T  16413336 ctgcagatccttttctcgtaacataagttcattcctcagcgcttccagttccagtatggctttttcttgatcctt 16413410  T

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