View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_49 (Length: 220)

Name: NF14142_low_49
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_49
NF14142_low_49
[»] chr7 (7 HSPs)
chr7 (29-220)||(1785663-1785853)
chr7 (29-82)||(4303166-4303219)
chr7 (107-174)||(18987430-18987497)
chr7 (107-174)||(19002057-19002124)
chr7 (35-97)||(11228464-11228525)
chr7 (29-86)||(8915448-8915505)
chr7 (29-82)||(11001101-11001154)
[»] chr1 (4 HSPs)
chr1 (35-201)||(8966033-8966200)
chr1 (48-166)||(31522507-31522625)
chr1 (35-97)||(10926938-10927000)
chr1 (29-92)||(10927851-10927914)
[»] chr6 (6 HSPs)
chr6 (27-132)||(3541906-3542011)
chr6 (27-132)||(30049576-30049681)
chr6 (27-132)||(30051863-30051968)
chr6 (29-92)||(18203184-18203246)
chr6 (29-82)||(32361116-32361169)
chr6 (37-95)||(8047663-8047721)
[»] scaffold0110 (1 HSPs)
scaffold0110 (27-132)||(45941-46046)
[»] chr8 (2 HSPs)
chr8 (27-132)||(22922175-22922280)
chr8 (29-84)||(26377779-26377834)
[»] chr2 (6 HSPs)
chr2 (35-132)||(2165583-2165680)
chr2 (29-97)||(27952652-27952720)
chr2 (35-98)||(280295-280358)
chr2 (29-82)||(31636044-31636097)
chr2 (35-97)||(33053163-33053224)
chr2 (37-93)||(22011130-22011186)
[»] chr5 (2 HSPs)
chr5 (36-130)||(19677629-19677723)
chr5 (37-97)||(21845225-21845285)
[»] chr3 (1 HSPs)
chr3 (37-85)||(3064074-3064122)
[»] scaffold0054 (1 HSPs)
scaffold0054 (35-84)||(49069-49118)
[»] chr4 (1 HSPs)
chr4 (29-114)||(13085421-13085506)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 1785663 - 1785853
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgccaca 128  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785663 ccctcatacatcagttttctccactt-tgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgccaca 1785761  T
Q  129 ttgacaaattaaactctccggcatttatcaacaacatttttcatctaacatgtatccctcatgggaggtaaatcgtttgatggctcaccttc 220  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785762 ttgacaaatttaactctccggcgtttatcaacaacatttttcatctaacatgtatccctcatgggaggtaaatcgtttgatggctcaccttc 1785853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 4303219 - 4303166
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcatt 82  Q
    ||||| ||||||||||| ||||||||||||| |||||||  |||||||||||||    
T  4303219 ccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcatt 4303166  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 18987497 - 18987430
Alignment:
Q  107 atattcatagatgtttgccacattgacaaattaaactctccggcatttatcaacaacatttttcatct 174  Q
    |||||||||||||| ||||||||||  || || |||||||   ||||||||||||||||| |||||||    
T  18987497 atattcatagatgtctgccacattgtaaattttaactctcaaacatttatcaacaacattgttcatct 18987430  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 19002124 - 19002057
Alignment:
Q  107 atattcatagatgtttgccacattgacaaattaaactctccggcatttatcaacaacatttttcatct 174  Q
    |||||||||||||| ||||||||||  || || |||||||   ||||||||||||||||| |||||||    
T  19002124 atattcatagatgtctgccacattgtaaattttaactctcaaacatttatcaacaacattgttcatct 19002057  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 11228525 - 11228464
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttc 97  Q
    |||||||||||||||| ||||| || |||| | | ||||||||||||||||| ||||||||||    
T  11228525 tacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttc 11228464  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 8915448 - 8915505
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaa 86  Q
    ||||| ||||||||||| ||||| ||||||| |||| ||| |||| ||||||||||||    
T  8915448 ccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaa 8915505  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 11001101 - 11001154
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcatt 82  Q
    ||||| ||||||||||| ||||||||||||| |||||||| || | ||||||||    
T  11001101 ccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcatt 11001154  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 8966033 - 8966200
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgccacattg-ac 133  Q
    ||||||||||| ||||||||||||| |||||||| | ||||||||||||| | ||||| |||||| | |||||||||||||||||| | |||||||| |     
T  8966033 tacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagcttcatttgcatgatattcatagatgtcttccacattgaat 8966132  T
Q  134 aaattaaactctccggcatttatcaacaacatttttcatctaacatgtatccctcatgggaggtaaat 201  Q
       || ||| ||||| | ||||||||||||||| | |||   |||| |||||||||||||||| ||||    
T  8966133 ttttttaaccctccgacgtttatcaacaacattgtccattatacatttatccctcatgggagggaaat 8966200  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 31522625 - 31522507
Alignment:
Q  48 tccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgccacattgacaaattaaactctcc 147  Q
    |||||||||||| ||||||||| ||||||||| |||| | || || |||||||| || |||||||||||||| |||| ||||||| || || |||||||     
T  31522625 tccacctctgaagaactcgacttcgagttctcgttctgataatgagcttcatctgcaagatattcatagatggttgctacattgaaaattttaactctct 31522526  T
Q  148 ggcatttatcaacaacatt 166  Q
      | |||||||||||||||    
T  31522525 aacgtttatcaacaacatt 31522507  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 10927000 - 10926938
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttc 97  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  10927000 tacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttc 10926938  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 10927914 - 10927851
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaaga 92  Q
    ||||| |||| |||||| |||||| |||||| |||||||| ||||||||||||||||| |||||    
T  10927914 ccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaaga 10927851  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 3542011 - 3541906
Alignment:
Q  27 agccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgcca 126  Q
    ||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||| |||| |||||||  |||| |||||    
T  3542011 agccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaaggacttcatctgcatggtattcatgaatgtctgcca 3541912  T
Q  127 cattga 132  Q
    ||||||    
T  3541911 cattga 3541906  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 30049681 - 30049576
Alignment:
Q  27 agccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgcca 126  Q
    ||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||||||||| ||||||  |||| | |||    
T  30049681 agccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaaggacttcatctacatgacattcatgaatgtctacca 30049582  T
Q  127 cattga 132  Q
    ||||||    
T  30049581 cattga 30049576  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 30051968 - 30051863
Alignment:
Q  27 agccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgcca 126  Q
    ||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||||||||  ||||||  |||| | |||    
T  30051968 agccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaaggacttcatctacatggcattcatgaatgtctacca 30051869  T
Q  127 cattga 132  Q
    ||||||    
T  30051868 cattga 30051863  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 18203246 - 18203184
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaaga 92  Q
    ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||    
T  18203246 ccctcctacatcagtctcctccacctctgaagaactcgac-ccgagttctcattttaataaaga 18203184  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 32361169 - 32361116
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcatt 82  Q
    ||||| ||||| |||||||||||||||| |||||||||||  ||||||||||||    
T  32361169 ccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcatt 32361116  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 8047663 - 8047721
Alignment:
Q  37 catcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaact 95  Q
    |||| |||| ||||||||||||| |||| ||| ||||||||| ||||||| ||||||||    
T  8047663 catcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaagaact 8047721  T

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Target: scaffold0110 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 45941 - 46046
Alignment:
Q  27 agccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgcca 126  Q
    ||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||| ||||| ||||||  |||| | |||    
T  45941 agccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaaggacttcatctgcatgacattcatgaatgtctacca 46040  T
Q  127 cattga 132  Q
    ||||||    
T  46041 cattga 46046  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 22922175 - 22922280
Alignment:
Q  27 agccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgcca 126  Q
    ||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||| |||| ||||| |  |||| |||||    
T  22922175 agccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttcataaaggacttcatctgcatggtattcctgaatgtctgcca 22922274  T
Q  127 cattga 132  Q
    ||||||    
T  22922275 cattga 22922280  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 26377834 - 26377779
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattct 84  Q
    ||||| ||||||||||| |||||||| |||| |||||||| || ||||||||||||    
T  26377834 ccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattct 26377779  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 2165680 - 2165583
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgccacattga 132  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||| |||| |||||||  |||| |||||||||||    
T  2165680 tacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaaggacttcatctgcatggtattcatgaatgtctgccacattga 2165583  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 27952652 - 27952720
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttc 97  Q
    ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||||| ||||    
T  27952652 ccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttc 27952720  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 280295 - 280358
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttca 98  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||||| |||||    
T  280295 tacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttca 280358  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 31636097 - 31636044
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcatt 82  Q
    ||||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  31636097 ccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatt 31636044  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 33053224 - 33053163
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttc 97  Q
    ||||||||||| ||||||||||||| |||||||| ||| ||||| ||||||| ||||| ||||    
T  33053224 tacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttc 33053163  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 22011186 - 22011130
Alignment:
Q  37 catcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaa 93  Q
    ||||| ||| |||||||||| || |||||||| | ||||||||||||||| ||||||    
T  22011186 catcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaa 22011130  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 19677629 - 19677723
Alignment:
Q  36 acatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcatagatgtttgccacatt 130  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||  | | |||| ||||||||| |||| |||||||  |||| |||||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcatctttataaaggacttcatctgcatggtattcatgtatgtctgccacatt 19677723  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 21845225 - 21845285
Alignment:
Q  37 catcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttc 97  Q
    |||||||||  |||||||||||| |||||||| ||||||||||||||| | ||||| ||||    
T  21845225 catcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttc 21845285  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 3064074 - 3064122
Alignment:
Q  37 catcagtcttctccacctctgaaaaactcgactccgagttctcattcta 85  Q
    ||||||||| ||||||||||||| |||||||| |||||||||| |||||    
T  3064074 catcagtctcctccacctctgaagaactcgaccccgagttctcgttcta 3064122  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 49118 - 49069
Alignment:
Q  35 tacatcagtcttctccacctctgaaaaactcgactccgagttctcattct 84  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||| |||||    
T  49118 tacatcagtctcctccacctctgaagaactcaaccccgagttcttattct 49069  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 13085421 - 13085506
Alignment:
Q  29 ccctcatacatcagtcttctccacctctgaaaaactcgactccgagttctcattctaacaaagaacttcatctacatgatattcat 114  Q
    ||||| |||||||||||  |||| ||||||| |||||||| ||||||||||||  | | |||| || |||||| |||| |||||||    
T  13085421 ccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaaggacctcatctgcatggtattcat 13085506  T

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