View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_5 (Length: 631)
Name: NF14142_low_5
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 8 - 617
Target Start/End: Complemental strand, 32194866 - 32194257
Alignment:
| Q |
8 |
ggaggagcagagagccttgagagggtttttcggagaactgctcacaggttttggctcaggtagcagctgtttggcatgccttgaagcatgcacggccaga |
107 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32194866 |
ggaggaacaaagagccttgagagggtttttcggagaactgctcacaggttttggctctggtagcagctgtttggcatgccttgaagcatgcacggccaga |
32194767 |
T |
|
| Q |
108 |
tagtaaaaactagaaccatatgaactggttgcctctgtctcacggttatgtccaatgcaactcagatgttgctatagtttctgcccaaaatggagttggt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32194766 |
tagtaaaaactagaaccatatgaactggttgcctctgtctcacggttatgtccaatgcaactcagatgttgctatagtttctgcccaaaacggagttggt |
32194667 |
T |
|
| Q |
208 |
atgggagcatgtgtgcatgatagtgcatgccgtttaacaccagcatactctatgtggattccttcaactatgacggcggtggaaggggaagcgtgggggc |
307 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32194666 |
atgggagcatgtgtgcatgatagtgcaggccgtttaacaccagcaaactctatgtggattccttcaactatgacggcggtggaaggggaagcatgggggc |
32194567 |
T |
|
| Q |
308 |
tgttgcaatctctcaagtggcttgtgtccatgaatcttgaatttattgaattggaaagtaagcaagttgtgactgatatctacaatgttaaaactgattt |
407 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32194566 |
tgttgcaatctctcaagtggcttgtgtccttgaatcttgaatttattgaattggaaagtaagcaagttgtgactgatatctacaatgttaaaactgattt |
32194467 |
T |
|
| Q |
408 |
atctgagtatggttctctcttataattatgtgtaagaccgaatttcttcatcagaagcataatgattttaacatgctatttgtttttcacatcatacttt |
507 |
Q |
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| T |
32194466 |
atctgagtatgggtctctcttataattatgtgtaagaccgaatttcttcatcagaagcataatgattttaacatgctatttgtttttcacatcatacttt |
32194367 |
T |
|
| Q |
508 |
tctaacaatgtgataaaaggttttttctcttaaaacgttcctttaaatgtgtaaccggaactgaatactagataattaagagatcagacatgtaaacaca |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32194366 |
tctaacaatgtgataaaaggttttttctcttaaaacgttcctttaaatgtgtaaccggaactgaatactagataattaagagatcagacatgtaaacaca |
32194267 |
T |
|
| Q |
608 |
gccttgaaac |
617 |
Q |
| |
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|||||||||| |
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| T |
32194266 |
gccttgaaac |
32194257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 32185928 - 32185808
Alignment:
| Q |
301 |
tgggggctgttgcaatctctcaagtggcttgtgtccatgaatcttgaatttattgaattggaaagtaagcaagttgtgactgatatctacaa----tgtt |
396 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||| | || |||||| ||| |||||| || | |
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| T |
32185928 |
tgggggctgttgcaatctctcaagtggcttatgtccatgaatcatgactttattgaattggacagtaa--atgtggtgactaatacctacaattattgct |
32185831 |
T |
|
| Q |
397 |
aaaactgatttatctgagtatgg |
419 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32185830 |
aaaactgatttatctgagtatgg |
32185808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 32186870 - 32186803
Alignment:
| Q |
295 |
gaagcgtgggggctgttgcaatctctcaagtggcttgtgtccatgaatcttgaatttattgaattgga |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |
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| T |
32186870 |
gaagcgtgggggctgttgcaatctctcaagtggcttatgtcaatgaatcttgactttattgaattgga |
32186803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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